CTCF binding polarity determines chromatin looping
Direct links to NCBI, no account and no request form: the whole study as GSE72720_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 506 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA294741 and SRA study SRP063007. Searching any of these in the dataset finder brings you back here.
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- GSE244681 CTCF-mediated 3D chromatin predetermines the gene expression program in the male germline 26 samples
- GSE201852 TF co-binding to nucleosome arrays 116 samples
- GSE271760 Structural perturbation of chromatin domains with multiple developmental regulators can severely impact gene regulation and development 88 samples
- GSE262521 Disentangling the architectural and non-architectural functions of CTCF and cohesin in global gene regulation 68 samples
- GSE55914 RNA-RNA interactions enable specific targeting of noncoding RNAs to nascent pre-mRNAs and chromatin sites 46 samples
- GSE296587 Sequencing DNA methylation and hydroxymethylation at co-occurring chromatin features 31 samples
- GSE246984 The impact of the embryonic DNA methylation program on CTCF-mediated genome regulation 28 samples
- GSE304391 Global identification of ER stress-regulated RNA binding Proteins in clonal pancreatic beta-cells, reveals an important role for DEAD-box helicase 3 X-linked (DDX3X) in the execution of the Unfolded Protein Response and the determination of cell fate. 12 samples
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