RNA-Seq characterization of human H1-derived NPC differentiation timecourse
Non-coding RNA profiling · human · 20 samples
- What it is
- Non-coding RNA profilingLevels of RNAs that do not code for proteins, such as miRNA or lncRNA.
- Organism
- Homo sapiens (human)
- Topic
- Nasopharyngeal carcinomaThis series is part of our curated briefing on it.
- Samples
- 20 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE56785_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
Also filed as BioProject PRJNA244582 and SRA study SRP041159. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 20 more — browse all 20 samples with per-sample file links →
- GSE277900 ZIKV infection series in paediaitric brain tumour and NPC cell lines 61 samples same disease briefing · shares npc
- GSE282685 NPC-derived exosome-mediated effects on macrophages 35 samples same disease briefing · shares npc
- GSE185644 Upregulation of SNAP25 by HDAC inhibition ameliorates NPC disease phenotypes via autophagy induction 4 samples same disease briefing · shares npc
- GSE280127 Nasopharyngeal carcinoma (NPC)-derived exosomes reconstitute tumor microenvironment 2 samples same disease briefing · shares npc
- GSE302204 RNA-seq of Human nasopharyngeal carcinoma cells in BALF2-LR and BALF2-HR overexpress group 6 samples same disease briefing · shares rna-seq
- GSE319431 RNA-seq of Human nasopharyngeal carcinoma cells in BALF2-LR and BALF2-HR overexpress group 6 samples same disease briefing · shares rna-seq
- GSE320342 Culturomics reveals Fusobacterium-Prevotella mutualism as a hallmark of nasopharyngeal tumor microbiota [Tissue RNA-seq] 35 samples same disease briefing · shares rna-seq
- GSE320343 Culturomics reveals Fusobacterium-Prevotella mutualism as a hallmark of nasopharyngeal tumor microbiota [Cell RNA-seq] 12 samples same disease briefing · shares rna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.