Transcriptome data of CD34+ human cord blood-derived cell treated with UM171, SR1 or both
RNA-seq (gene expression) · human · 25 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 25 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE57299_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA246215 and SRA study SRP041675. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 25 more — browse all 25 samples with per-sample file links →
- GSE57561 RNA expression profiling of human mPB or CB-derived CD34+ cells treated with UM171 at different doses 18 samples shares um171, cd34, treated
- GSE215045 Transcriptional profiling by 3' digital gene expression of human CD34+ HSPCs isolated from the umbilical cord blood 96 samples shares cd34, cord
- GSE248671 Gene expression analysis of human sickle cell disease (SCD) and healthy donor (HD) CD34+ hematopoietic stem/progenitor cells (HSPCs) treated with CRISPR/Cas9 targeting the HBG promoters or untreated samples 24 samples shares cd34, treated
- GSE324988 Effect of BHLHE40 silencing using short-hair pin RNA on CD34+ cells isolated from human cord blood, during TGF-B1 depedent Langerhans cell differentiation 12 samples shares cd34, cord
- GSE314294 MCF-7 cells long-term treated with Fulv plus Abema acquired ESR1 Y537S mutation and exhibited defective RSR and DDR 9 samples shares sr1, treated
- GSE336734 Transcriptomic profiling of MCF7 ESR1 Y537S mutant cells treated with abemaciclib and/or fulvestrant 8 samples shares sr1, treated
- GSE13284 Human CD34-derived erythroid progenitors treated with BCL11A siRNAs 12 samples shares cd34, treated
- GSE38692 ASXL1 Knock Down in Normal CD34+ Cord Blood and UKE1 Cell Lines 13 samples shares cd34, cord
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.