Cells and exosomes after cell-free culture
Non-coding RNA profiling · mouse · 12 samples
- What it is
- Non-coding RNA profilingLevels of RNAs that do not code for proteins, such as miRNA or lncRNA.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples: 6 conditions, mostly in duplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Read the full summary ↓
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE60715_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
Also filed as BioProject PRJNA259429. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 12 samples.
How we read this: 6 replicated groups read from 12 sample titles; they account for 12 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM1486483 MCF7 cells_1 MCF7 cells
- GSM1486484 MCF7 cells_2 MCF7 cells
- GSM1486485 MCF7 exos_1 MCF7 exos
- GSM1486486 MCF7 exos_2 MCF7 exos
- GSM1486487 4T1 exos_1 4T1 exos
- GSM1486488 4T1 exos_2 4T1 exos
- GSM1486489 NMuMG exos_1 NMuMG exos
- GSM1486490 NMuMG exos_2 NMuMG exos
- GSM1486491 MDA-MB-231 exos_1 MDA-MB-231 exos
- GSM1486492 MDA-MB-231 exos_2 MDA-MB-231 exos
- GSM1486493 MCF10A exos_1 MCF10A exos
- GSM1486494 MCF10A exos_2 MCF10A exos
No close match found for this topic, so these are simply the most-viewed datasets of the same kind.
- GSE290468 STAMP: Single-Cell Transcriptomics Analysis and Multimodal Profiling through Imaging 169 samples
- GSE58652 Tn5 transposase and tagmentation procedures for massively scaled sequencing projects 67 samples
- GSE280076 Dissecting RNA Selectivity Mediated by Tandem RNA-Binding Domains 66 samples
- GSE207360 Mesenchymal glioma stem cells trigger vasectasia, a distinct neovascularization process mediated by extracellular vesicles carrying EGFR [scRNA-seq] 45 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.