iBET resistance
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 35 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 35 samples: 35 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE63683_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA268682 and SRA study SRP064251. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 35 sample titles: 35 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM1552846 Sensitive 5.3 line
- GSM1552847 Sensitive 7.3 line
- GSM1552848 Sensitive 9.1 line
- GSM1552849 Sensitive 9.2 line
- GSM1552850 Parental MLL-AF9 line
- GSM1552851 600 Resistant 4.1 line
- GSM1552852 600 Resistant 5.1 line
- GSM1552853 600 Resistant 5.2 line
- GSM1552854 600 Resistant 5.3 line
- GSM1552855 600 Resistant 5.3S line
- GSM1552856 400 Resistant 5.1 line
- GSM1552857 400 Resistant 5.3S line
- GSM1552858 800 Resistant 5.1 line
- GSM1552859 800 Resistant 5.3S line
- GSM1555167 600 Resistant 5.3S line Rep 1 [RNA-seq]
- GSM1555168 600 Resistant 5.3S line Rep 2 [RNA-seq]
- GSM1555169 600 Resistant 5.3S line Rep 3 [RNA-seq]
- GSM1555170 Sensitive 5.3 line Rep 1 [RNA-seq]
- GSM1555171 Sensitive 5.3 line Rep 2 [RNA-seq]
- GSM1555172 Sensitive 5.3 line Rep 3 [RNA-seq]
- GSM1555173 600 Resistant 5.3S line BRD2 ChIP
- GSM1555174 600 Resistant 5.3S line BRD3 ChIP
- GSM1555175 600 Resistant 5.3S line BRD4 ChIP
- GSM1555176 Sensitive 5.3 line BRD2 ChIP
- GSM1555177 Sensitive 5.3 line BRD3 ChIP
- GSM1555178 Sensitive 5.3 line BRD4 ChIP
- GSM1897158 Resistant line BRD4 ChIP
- GSM1897159 Resistant line H3K27ac ChIP
- GSM1897160 Sensitive line BRD4 ChIP
- GSM1897161 Sensitive line H3K27ac ChIP
- GSM1897162 Sensitive line Bcat ChIP
- GSM1897163 Resistant line Bcat ChIP
- GSM1897164 Resistant line DKK Bcat ChIP
- GSM1909031 Resistant line ChIP input
- GSM1909032 Sensitive line ChIP input
- GSE218178 Adaptation to an acid microenvironment promotes pancreatic cancer organoid growth and drug resistance 183 samples shares resistance
- GSE307773 Oncogenic MAPK signalling induces epithelial cell state change and therapeutic resistance in vivo [RNA-Seq] 175 samples shares resistance
- GSE314029 An unimolecular GIPR:GLP-1R:PPAR , , quintuple agonist eliminates obesity and insulin resistance in mice. 159 samples shares resistance
- GSE218173 Adaptation to an acid microenvironment promotes pancreatic cancer organoid growth and drug resistance [acid] 150 samples shares resistance
- GSE293819 Monitoring systemic immune responses to checkpoint inhibition in breast cancer reveals host responses and mechanisms of resistance 142 samples shares resistance
- GSE240971 UHRF2 mediates resistance to DNA methylation reprogramming in primordial germ cells 95 samples shares resistance
- GSE290031 Very long-chain ceramides in skeletal muscle associate with systemic insulin resistance independent of obesity 92 samples shares resistance
- GSE249859 Unveiling the Molecular Legacy of Transient Insulin Resistance: Implications for Hepatic Metabolic Adaptability 82 samples shares resistance
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.