H3K18Ac and H3K18Cr ChIP-seq and RNA-seq analysis of LPS-stimulated RAW 264.7 cells
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 10 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 10 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE63889_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA269347 and SRA study SRP050599. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 10 more — browse all 10 samples with per-sample file links →
- GSE284009 RNA-seq Analysis of Vesicular Stomatitis Virus (VSV)-Infected RAW264.7 Macrophages with and without Prior BCG-lysate Exposure 8 samples shares raw, rna-seq
- GSE274237 Gene Expression Profiling and Epigenetic Alterations in RAW 264.7 Cells Following Treatment with Lipopolysaccharide and Methylcobalamin (MCB) [RNA-seq] 8 samples shares raw, rna-seq
- GSE183076 Expression profiles of E4BP4 knockout RAW264.7 cells [RAW_KOvsWT_RNA-seq] 6 samples shares raw, rna-seq
- GSE183078 Expression profiles of M2-polarized RAW264.7 cells [RAW_M2vsM0_RNA-seq] 6 samples shares raw, rna-seq
- GSE251808 RNA-Seq of GB2-treated and untreated RAW264.7 cells 6 samples shares raw, rna-seq
- GSE61851 RNA-seq analysis of withdrawal of miR-155 hyperexpression in miR-155-addicted tumors 6 samples shares raw, rna-seq
- GSE183077 Expression profiles of M1-polarized RAW264.7 cells [RAW_M1vsM0_RNA-seq] 6 samples shares raw, rna-seq
- GSE183079 ChIP_seq for E4BP4 in RAW264.7 cells [RAW_ChIP-seq] 4 samples shares raw, chip-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.