Elucidating the etiology and molecular pathogenicity of infectious diarrhea by high throughput RNA sequencing
RNA-seq (gene expression) · human · 255 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 255 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE69529_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA285798 and SRA study SRP059039. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 255 more — browse all 255 samples with per-sample file links →
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- GSE326201 Single-cell RNA sequencing of human hepatocellular carcinoma and adjacent non-tumour liver tissues reveals etiology-associated and etiology-independent tumour microenvironmental features 18 samples shares etiology
- GSE235778 Elucidating the molecular mechanisms underlying CRB1-related Leber congenital amaurosis (LCA) 12 samples shares elucidating
- GSE299837 Airway Epithelial SARS-CoV-2 Infectious and Repair Responses: Relationships to Age, Sex, and Post-COVID Pulmonary Syndromes 72 samples shares infectious
- GSE129752 Blood transcriptome indicates different disease etiology in pediatric ANCA-associated vasculitis subtypes. 52 samples shares etiology
- GSE262775 Elucidating and Pharmacologic Targeting of Coexisting Diffuse Midline Subpopulation Dependencies 24 samples shares elucidating
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.