CXCR5+ Follicular Cytotoxic T cells Control Viral Infection in B Cell follicles
RNA-seq (gene expression) · mouse · 8 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 8 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE76279_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA306776 and SRA study SRP067710. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 8 more — browse all 8 samples with per-sample file links →
- GSE239968 Interferon gamma suppresses T follicular helper cells and antibody responses upon viral infection 14 samples shares follicular, viral
- GSE302862 Divergent cytokine and transcriptional signatures control functional T follicular helper cell heterogeneity (RNAseq) 104 samples shares follicular, control
- GSE319904 RNA sequencing of Follicular Cytotoxic CD8+ T Cells from Trypanosoma cruzi-infected mice 12 samples shares follicular, cytotoxic
- GSE301250 Transcriptional analysis of Wt and CXCR5-KO cDC subsets 12 samples shares cxcr5
- GSE284244 Aging compromises terminal differentiation program of cytotoxic effector lineage and promotes exhaustion in CD8+ T cells responding to coronavirus infection [RNA-seq] 16 samples shares cytotoxic
- GSE249068 Mettl8 programs Tcf1+CXCR5+ T cells in autoimmune disease and tumor by mediating Tcf1 mRNA m3C modification and Tcf1-bound chromatin loops 62 samples shares cxcr5
- GSE247137 Optimal CXCR5 Expression during Tfh Maturation Involves Bhlhe40-Pou2af1 Axis 44 samples shares cxcr5
- GSE278494 Bidirectional regulation by BACH2 coordinates systemic CXCR5– vs CXCR5+ CD4+ T cell differentiation [ATAC-seq] 12 samples shares cxcr5
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.