Genome-wide analysis of trehalose-responsive gene expression in control or JNCL human fibroblasts.
Expression microarray · human · 12 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Samples
- 12 samples: 12 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE76643_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA308222. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 12 sample titles: 12 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM2029844 JNCL untreated fibroblasts [B1]
- GSM2029845 JNCL untreated fibroblasts [B2]
- GSM2029846 JNCL untreated fibroblasts [B3]
- GSM2029847 JNCL treated fibroblasts [BT1]
- GSM2029848 JNCL treated fibroblasts [BT2]
- GSM2029849 JNCL treated fibroblasts [BT3]
- GSM2029850 Control treated fibroblasts [TR1]
- GSM2029851 Control treated fibroblasts [TR2]
- GSM2029852 Control treated fibroblasts [TR3]
- GSM2029853 Control untreated fibroblasts [UT1]
- GSM2029854 Control untreated fibroblasts [UT2]
- GSM2029855 Control untreated fibroblasts [UT3]
- GSE4302 Genome-Wide Profiling of Airway Epithelial Cells in Asthmatics, Smokers and Healthy Controls 118 samples shares genome-wide, control
- GSE333738 Genome-wide mapping of human H4K20me3 in the HN-SCC-151 HPV-negative head and neck squamous cell carcinoma cells treated with DMSO or the SUV420H1 inhibitor A-196/siNC (control) or siSUV420H1 siRNAs. 24 samples shares genome-wide, control
- GSE301166 PURPL bidirectionally controls senescence: depletion rejuvenates fibroblasts while overexpression accelerates aging [RNA-Seq2] 18 samples shares fibroblasts, control
- GSE304266 Bulk RNA‑seq of IMR90 fibroblasts in IR‑induced senescence with siRNA knockdowns of CCND1, CDK4, CDK6 and controls 21 samples shares fibroblasts, control
- GSE6764 Genome-wide molecular profiles of HCV-induced dysplasia and hepatocellular carcinoma 75 samples shares genome-wide
- GSE224698 Gene expression profiles of human dermal fibroblasts and human pluripotent stem cells analyzed by bulk RNA-seq 69 samples shares fibroblasts
- GSE251807 Investigation of gene expression changes in normal human dermal fibroblasts after exposure to bone marrow mesenchymal stromal cell secretome 32 samples shares fibroblasts
- GSE284720 RNA-seq analysis identifies the impact of different organic components of fine particulate matter (PM2.5) on human nasal fibroblasts 15 samples shares fibroblasts
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.