Genome-Wide Profiling of Airway Epithelial Cells in Asthmatics, Smokers and Healthy Controls
Expression microarray · human · 118 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Samples
- 118 samples: 32 conditions, mostly in duplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE4302_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA94683. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 64 samples.
How we read this: 32 replicated groups read from 118 sample titles; they account for 64 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM98141 01SAGEA 01SAGEA
- GSM98142 01SAGEA2 01SAGEA
- GSM98143 02SAGEA2 02SAGEA
- GSM98144 02SAGEA 02SAGEA
- GSM98145 03SAGEA 03SAGEA
- GSM98146 03SAGEA2 03SAGEA
- GSM98147 04SAGEA2 04SAGEA
- GSM98148 04SAGEA 04SAGEA
- GSM98149 05SAGEA 05SAGEA
- GSM98150 05SAGEA2 05SAGEA
- GSM98151 06SAGEA2 06SAGEA
- GSM98152 06SAGEA 06SAGEA
- GSM98153 09SAGEA 09SAGEA
- GSM98154 09SAGEA2 09SAGEA
- GSM98155 10SAGEA 10SAGEA
- GSM98156 10SAGEA2 10SAGEA
- GSM98157 11SAGEA2 11SAGEA
- GSM98158 11SAGEA 11SAGEA
- GSM98159 15SAGEA 15SAGEA
- GSM98160 15SAGEA2 15SAGEA
- GSM98161 16SAGEA 16SAGEA
- GSM98162 16SAGEA2 16SAGEA
- GSM98163 18SAGEA 18SAGEA
- GSM98164 18SAGEA2 18SAGEA
- GSM98165 19SAGEA2 19SAGEA
- GSM98166 19SAGEA 19SAGEA
- GSM98167 20SAGEA 20SAGEA
- GSM98168 20SAGEA2 20SAGEA
- GSM98169 25SAGEA 25SAGEA
- GSM98170 25SAGEA2 25SAGEA
- GSM98171 27SAGEA 27SAGEA
- GSM98172 27SAGEA2 27SAGEA
- GSM98173 29SAGEA2 29SAGEA
- GSM98174 29SAGEA 29SAGEA
- GSM98175 31SAGEA 31SAGEA
- GSM98176 31SAGEA2 31SAGEA
- GSM98177 32SAGEA 32SAGEA
- GSM98178 32SAGEA2 32SAGEA
- GSM98179 36SAGEA2 36SAGEA
- GSM98180 36SAGEA 36SAGEA
+ 78 more — browse all 118 samples with per-sample file links →
- GSE161245 Comparison of bronchial epithelial cells obtained by bronchoscopy from mild asthma patients, moderate asthma patients, severe asthma patients and healthy controls 55 samples shares epithelial, controls, healthy
- GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls 192 samples shares controls, healthy
- GSE302306 Transcriptomic Profiling of CD66b+ Neutrophils from Healthy Controls and Cardiac Surgery Patients with Vasoplegic and Septic Shock Syndromes Across Multiple Timepoints 68 samples shares controls, healthy
- GSE327386 RNA-Seq of paired diagnosis and relapse AML specimens with healthy controls 130 samples shares controls, healthy
- GSE158592 RNAseq analysis of blood from influenza infected patients and healthy controls SIG-2018 74 samples shares controls, healthy
- GSE196350 RNAseq analysis of blood from influenza infected patients and healthy controls 69 samples shares controls, healthy
- GSE292338 RNAseq analysis of human neutrophils from healthy controls, people with frailty and people with rheumatoid arthritis 39 samples shares controls, healthy
- GSE297547 Single-cell RNA sequencing of PBMCs from patients with myasthenia gravis and healthy controls 25 samples shares controls, healthy
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.