Enhanced CLIP (eCLIP) enables robust and scalable transcriptome-wide discovery and characterization of RNA binding protein binding sites
Expression microarray · human · 100 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Samples
- 100 samples
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE77634_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA311057 and SRA study SRP072994. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 100 more — browse all 100 samples with per-sample file links →
- GSE311747 RBProximity-CLIP enables subcellular mapping of RNA-binding protein interactions at nucleotide resolution [CLIP] 27 samples shares clip, enables, binding, protein
- GSE213806 Transcriptome-wide mapping of RNA:protein interactions of PRPF8 and SNRNP200 (BRR2) with retinitis pigmentosa (RP) mutations by iCLIP 27 samples shares clip, transcriptome-wide, protein
- GSE271168 irCLIP-RNP reveals patterns of dynamic protein associations on RNA [RNA-seq] 40 samples shares clip, protein
- GSE261913 Disulfide Tethering to Map Small Molecule Binding Sites Transcriptome-Wide 134 samples shares transcriptome-wide, binding
- GSE97084 Enhanced Protein Translation Underlies Improved Metabolic and Physical Adaptations to Different Exercise Training Modes in Young and Old Humans 103 samples shares enhanced, protein
- GSE254194 Transcriptome-wide identification of 5-methylcytosine by deaminase and reader protein-assisted sequencing 20 samples shares transcriptome-wide, protein
- GSE298715 Primary human intestinal organoids recapitulate enteric infection of monkeypox virus and enable scalable drug discovery 18 samples shares discovery, scalable
- GSE301413 Discovery of a paralog-selective p300 protein degrader with potent anti-cancer activity in hematological malignancies 16 samples shares discovery, protein
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.