Identification of methylation haplotype blocks aids in deconvolution of heterogeneous tissue samples and tissue-of-origin mapping from plasma DNA

SuperSeries — this record groups several sub-series.

Direct links to NCBI, no account and no request form: the whole study as GSE79279_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 159 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA315380 and SRA study SRP071770. Searching any of these in the dataset finder brings you back here.

The sample list for this study is not cached yet. Press Sort into groups and it will be fetched from NCBI.

+ 159 more — browse all 159 samples with per-sample file links →

• GSE79277 Identification of methylation haplotype blocks aids in deconvolution of heterogeneous tissue samples and tissue-of-origin mapping from plasma DNA [Plasma RRBS] 134 samples
• GSE79215 Identification of methylation haplotype blocks aids in deconvolution of heterogeneous tissue samples and tissue-of-origin mapping from plasma DNA [WGBS] 10 samples
• GSE25247 BI Human Reference Epigenome Mapping Project: Characterization of DNA methylation by RRBS in human subject 55 samples
• GSE25246 BI Human Reference Epigenome Mapping Project: Characterization of DNA methylation by RRBS 10 samples
• GSE319641 RNA-Seq profiling of pre- and on-treatment tumor samples from breast cancer patients enrolled in the NeoTRIP trial. 401 samples
• GSE294559 Single-cell multi-omics characterize colorectal tumors, adjacent healthy tissue and matched organoids identifying CRC-unique features 72 samples
• GSE235715 Multi-scaled transcriptomics of chronically inflamed nasal epithelium reveals immune-epithelial dynamics and tissue remodeling in nasal polyp formation 60 samples
• GSE54983 DNA methylation data from Reduced Representation Bisulphite sequencing in the Dutch Hunger Winter Families Study 48 samples

Search all human methylation datasets in GEO →