Expression anaylsis of human mesenchymal and endothelial cells
Expression microarray · human · 48 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Samples
- 48 samples: 9 conditions, mostly in duplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE86885_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA342824. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 24 samples.
How we read this: 9 replicated groups read from 48 sample titles; they account for 24 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM2309933 pancreas_pericyte_p4_rep1 pancreas_pericyte_p4
- GSM2309934 brain_pericyte_p8_rep1
- GSM2309935 pancreas_pericyte_p8_rep2 pancreas_pericyte_p8
- GSM2309936 lung_pericyte_p8_rep1
- GSM2309937 muscle_pericyte_p8_rep1 muscle_pericyte_p8
- GSM2309938 placenta_pericyte_p7_rep1
- GSM2309939 muscle_pericyte_p2_rep2 muscle_pericyte_p2
- GSM2309940 pancreas_pericyte_p8_rep3 pancreas_pericyte_p8
- GSM2309941 umbilical artery_endothelial cell_p3_rep1
- GSM2309942 umbilical vein_endothelial cell_p2_rep1
- GSM2309943 muscle_pericyte_p8_rep3 muscle_pericyte_p8
- GSM2309944 umbilical artery_endothelial cell_p5_rep2
- GSM2309945 muscle_pericyte_p2_rep4 muscle_pericyte_p2
- GSM2309946 lung_pericyte_p2_rep2
- GSM2309947 placenta_pericyte_p0_rep2
- GSM2309948 pancreas_pericyte_p2_rep4
- GSM2309949 brain_pericyte_p2_rep2
- GSM2309950 brain_pericyte_p4_rep3
- GSM2309951 pancreas_pericyte_p4_rep5 pancreas_pericyte_p4
- GSM2309952 lung_pericyte_p4_rep3 lung_pericyte_p4
- GSM2309953 muscle_pericyte_p4_rep5
- GSM2309954 placenta_pericyte_p4_rep3
- GSM2309955 placenta_pericyte_p2_rep4
- GSM2309956 lung_pericyte_p4_rep4 lung_pericyte_p4
- GSM2309957 umbilical vein_endothelial cell_p4_rep2
- GSM2309958 umbilical artery_endothelial cell_p8_rep3
- GSM2309959 umbilical vein_endothelial cell_p8_rep3
- GSM2309960 umbilical artery_endothelial cell_p9_rep4
- GSM2309961 adipocyte_p2_rep1
- GSM2309962 adipocyte_p4_rep2
- GSM2309963 adipocyte_p8_rep3
- GSM2309964 saphenous vein_endothelial cell_p2_rep1
- GSM2309965 saphenous vein_endothelial cell_p4_rep2
- GSM2309966 stromal derived_mesenchymal stem cell_p2_rep1 stromal derived_mesench…
- GSM2309967 stromal derived_mesenchymal stem cell_p2_rep2 stromal derived_mesench…
- GSM2309968 stromal derived_mesenchymal stem cell_p2_rep3 stromal derived_mesench…
- GSM2309969 stromal derived_mesenchymal stem cell_p2_rep4 stromal derived_mesench…
- GSM2309970 stromal derived_mesenchymal stem cell_p4_rep5
- GSM2309971 dermal_fibroblast_p2_rep1 dermal_fibroblast_p2
- GSM2309972 dermal_fibroblast_p2_rep2 dermal_fibroblast_p2
+ 8 more — browse all 48 samples with per-sample file links →
- GSE217649 Bulk RNA sequencing for gene expression profileing of primary liver sinusoidal endothelial cells and iPSC-derived hepatic endoderm, septum mesenchymal cells, endothelial cells, and liver bud organoids 26 samples shares mesenchymal, endothelial
- GSE216842 Transcriptomic landscape of human primary stromal cells (fibroblasts, endothelial cells and mesenchymal stem cells) upon therapy-induced senescence (genotoxic chemotherapy） 24 samples shares mesenchymal, endothelial
- GSE305558 Single-cell profiling reveals RAB13+ endothelial cells and profibrotic mesenchymal cells in aged human bone marrow 12 samples shares mesenchymal, endothelial
- GSE210361 Expression profiling of circular RNAs during differentiation of human pluripotent stem cells into vascular endothelial and smooth muscle cells 160 samples shares endothelial
- GSE272960 EWS-FLI1 Expression in Human Embryonic Mesenchymal Stem Cells Leads to Defective DNA Damage Repair and Ewing Sarcoma 24 samples shares mesenchymal
- GSE201709 Multiomic profiling of vascular endothelial cell differentiation from human embryonic stem cells 130 samples shares endothelial
- GSE328191 Multiomic profiling of vascular endothelial cell differentiation from human embryonic stem cells [ChIP-seq] 80 samples shares endothelial
- GSE294621 Vascular-type heterogeneity is associated with differential gene expression profiles of endothelial cells under shear stress 74 samples shares endothelial
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.