Dissecting immune circuits by linking CRISPR pooled screens with single cell RNA-seq [SET2]

Direct links to NCBI, no account and no request form: the whole study as GSE90487_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 8 samples.

Also filed as BioProject PRJNA354871 and SRA study SRP093881. Searching any of these in the dataset finder brings you back here.

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+ 8 more — browse all 8 samples with per-sample file links →

• GSE300293 Single-cell and spatial transcriptomics analysis of tobacco-associated lung adenocarcinoma development, and in response to targeting inflammation alone or in combination with immune checkpoint blockade in precancerous phase [Spatial transcriptomics] 19 samples
• GSE327391 In vivo systematic detection of the outcomes of CRISPR/Cas9 mediated DNA repair in skeletal muscle stem cells [control] 81 samples
• GSE304674 scHiCAR: a tri-modal single-cell genomics technology for integrated transcriptome, epigenome, and 3D genome analysis in complex tissues [mouse_skeletal_muscle_scHiCAR] 50 samples
• GSE94489 Cell cycle dynamics of chromosomal organisation at single-cell resolution 49 samples
• GSE303006 Gene regulatory landscape dissected by single-cell four-omics sequencing 16 samples
• GSE327392 In vivo systematic detection of the outcomes of CRISPR/Cas9 mediated DNA repair in skeletal muscle stem cells [IDM-Seq long-read] 12 samples
• GSE267118 scHiCAR: a tri-modal single-cell genomics technology for integrated transcriptome, epigenome, and 3D genome analysis in complex tissue [mouse_brain_bulk_HiCAR] 9 samples
• GSE280183 Type-2-immune history imprints local training in nerve-airway associated interstitial macrophages (NAMs) for disease tolerance during respiratory viral infection 8 samples

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