Cancer-specific retargeting of BAF complexes by a prion-like domain
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 85 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 85 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE94278_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA369232 and SRA study SRP098569. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 85 more — browse all 85 samples with per-sample file links →
- GSE94275 Cancer-specific retargeting of BAF complexes by a prion-like domain [ChIP-Seq] 43 samples shares baf, cancer-specific, retargeting, prion-like, complexes, domain
- GSE94277 Cancer-specific retargeting of BAF complexes by a prion-like domain [RNA-Seq] 29 samples shares baf, cancer-specific, retargeting, prion-like, complexes, domain
- GSE318082 BAF complexes maintain accessibility at stimulus-responsive chromatin and are required for transcriptional stimulus responses [ATAC-seq] 63 samples shares baf, complexes
- GSE318083 BAF complexes maintain accessibility at stimulus-responsive chromatin and are required for transcriptional stimulus responses [RNA-seq] 43 samples shares baf, complexes
- GSE266321 The BAF complex enhances transcription through interaction with H3K56ac in the histone globular domain 8 samples shares baf, domain
- GSE335210 SOX9-BAF multi-omics profiling in human colon cancer cell models 173 samples shares baf
- GSE249362 Non-Canonical BAF and mSWI/SNF Regulates POU2F3 and are Selective Targetable Dependencies for POU2F3-Positive Small Cell Lung Cancer 125 samples shares baf
- GSE235294 PBRM1 directs PBAF to pericentromeres and protects centromere integrity [CUT&RUN] 88 samples shares baf
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.