Cancer-specific retargeting of BAF complexes by a prion-like domain [RNA-Seq]
RNA-seq (gene expression) · human · 29 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 29 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE94277_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA369237 and SRA study SRP098574. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 29 more — browse all 29 samples with per-sample file links →
- GSE94278 Cancer-specific retargeting of BAF complexes by a prion-like domain 85 samples shares baf, cancer-specific, retargeting, prion-like, complexes, domain
- GSE94275 Cancer-specific retargeting of BAF complexes by a prion-like domain [ChIP-Seq] 43 samples shares baf, cancer-specific, retargeting, prion-like, complexes, domain
- GSE318083 BAF complexes maintain accessibility at stimulus-responsive chromatin and are required for transcriptional stimulus responses [RNA-seq] 43 samples shares baf, complexes, rna-seq
- GSE304680 Structural and functional basis of PU.1-BAF interaction enables targeting of lineage-specific transcription [RNA-seq] 25 samples shares baf, rna-seq
- GSE275420 PBAF associates with repressed chromatin to enable REST occupancy (RNA-Seq) 20 samples shares baf, rna-seq
- GSE310048 DUSP2 Suppresses the Chromatin Remodeling BAF Complex to Orchestrate CD8+ T Cell Effector Programming [RNA-seq] 8 samples shares baf, rna-seq
- GSE266203 Targeting of SUMOylation leads to cBAF complex stabilization and disruption of the SS18::SSX transcriptome in synovial sarcoma [RNA-seq_HS-SY-II] 8 samples shares baf, rna-seq
- GSE266321 The BAF complex enhances transcription through interaction with H3K56ac in the histone globular domain 8 samples shares baf, domain
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.