Mapping the Genetic Architecture of Gene Expression in Human Liver
Expression microarray · human · 427 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Samples
- 427 samples: 239 distinct titles, 5 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Read the full summary ↓
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE9588_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA103427. Searching any of these in the dataset finder brings you back here.
How we read this: Read from the first 400 of 427 sample titles: 239 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM242213 US-1078955 vs. Human Liver 53
- GSM242214 US-1078955 vs. Human Liver 55
- GSM242215 US-1078955 vs. Human Liver 56
- GSM242216 US-1078955 vs. Human Liver 57
- GSM242217 US-1078955 vs. Human Liver 59
- GSM242218 US-1078955 vs. Human Liver 63
- GSM242219 US-1078955 vs. Human Liver 64
- GSM242220 US-1078955 vs. Human Liver 65
- GSM242221 US-1078955 vs. Human Liver 67
- GSM242222 US-1078955 vs. Human Liver 71
- GSM242223 US-1078955 vs. Human Liver 74
- GSM242224 US-1078955 vs. Human Liver 75
- GSM242225 US-1078955 vs. Human Liver 79
- GSM242226 US-1078955 vs. Human Liver 89
- GSM242227 US-1078955 vs. Human Liver 93
- GSM242228 US-1078955 vs. Human Liver 108
- GSM242229 US-1078955 vs. Human Liver 114
- GSM242230 US-1078955 vs. Human Liver 119
- GSM242231 US-1078955 vs. Human Liver 121
- GSM242232 US-1078955 vs. Human Liver 124
- GSM242233 US-1078955 vs. Human Liver 125
- GSM242234 US-1078955 vs. Human Liver 127
- GSM242235 US-1078955 vs. Human Liver 130
- GSM242236 US-1078955 vs. Human Liver 131
- GSM242237 US-1078955 vs. Human Liver 143
- GSM242238 US-1078955 vs. 89-6-77# 5
- GSM242239 US-1078955 vs. 89-5-47# 6
- GSM242240 US-1078955 vs. 89-7-147# 8
- GSM242241 US-1078955 vs. 89-5-55# 9
- GSM242242 US-1078955 vs. 89-6-174# 11
- GSM242243 US-1078955 vs. 5331 (10/11/88)# 23
- GSM242244 US-1078955 vs. 88-05-216# 33
- GSM242245 US-1078955 vs. 88-03-250# 35
- GSM242246 US-1078955 vs. 11264 N# 44
- GSM242247 US-1078955 vs. 93-84# 45
- GSM242248 US-1078955 vs. HL-M-8# 64
- GSM242249 US-1078955 vs. HL-M-5# 67
- GSM242250 US-1078955 vs. HL 98# 71
- GSM242251 US-1078955 vs. HL 97# 72
- GSM242252 US-1078955 vs. HL 95# 73
+ 387 more — browse all 427 samples with per-sample file links →
- GSE309979 GeoMx GeoMx-DSP Toxic Lipid-induced Epigenetic Activation of ICAM1 in Liver Sinusoidal Endothelium Regulates Myeloid-Driven Fibro-inflammatory Response in MASH 217 samples shares genetic, liver
- GSE272080 3D chromatin-based variant-to-gene maps across 57 human cell types reveal the cellular and genetic architecture of autoimmune disease susceptibility [captureC] 6 samples shares architecture, genetic
- GSE254521 Epigenetic priming promotes acquisition of TKI resistance and oncogene amplification in human lung cancer 146 samples shares genetic
- GSE330465 Gene expression profiling of neoadjuvant ABFOLFOX treatment in patients with unresectable colorectal cancer with liver metastases 104 samples shares liver
- GSE130970 Gene expression predicts histological severity and reveals distinct molecular profiles of nonalcoholic fatty liver disease 78 samples shares liver
- GSE306993 Transcriptional and epigenetic targets of MEF2C in human microglia contribute to cellular functions related to autism risk and age-related disease. 76 samples shares genetic
- GSE262636 Histone Variant H2A.J is a Key Epigenetic Regulator in Human Trophoblast Development 58 samples shares genetic
- GSE304097 DNA methylation profiling identifies long-range epigenetic silencing of clustered protocadherins as a key determinant of meningioma progression 293 samples shares genetic
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.