A Comprehensive Roadmap of the Mammalian Ribo-interactome Connects Metabolism Enzymes with Specialized ER-Ribosomes
RNA-seq (gene expression) · mouse · 6 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 6 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE96998_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA380363 and SRA study SRP102438. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 6 more — browse all 6 samples with per-sample file links →
- GSE277835 TUT1 and USB1, the biogenesis enzymes for 2′,3′-cyclic phosphate modification at U6 snRNA 3’ end, have distinct roles in mammalian development [RNA-seq] 17 samples shares mammalian, enzymes
- GSE196779 Nucleolar migration regulates meiotic sex chromosome inactivation via phase separation during mammalian spermatogenesis 30 samples shares mammalian
- GSE281268 A specific gene expression program underlies antigen archiving by lymphatic endothelial cells in mammalian lymph nodes [scRNA-seq] 28 samples shares mammalian
- GSE268132 Plasticity of the Mammalian Integrated Stress Response [eIF2B5_eIF4E] 24 samples shares mammalian
- GSE263724 Studies of eRF1 in mammalian cells 12 samples shares mammalian
- GSE254723 Extensive folding variability between homologous chromosomes in mammalian cells 2239 samples shares mammalian
- GSE333859 A global view of cell-type-specific temporal dynamics in mammalian aging 1496 samples shares mammalian
- GSE248196 Characterizing dynamics and lineage of bihormonal cell in mammalian pancreatic islets 1440 samples shares mammalian
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.