Single-cell chromatin accessibility data from K562 cells using scATAC-seq
Direct links to NCBI, no account and no request form: the whole study as GSE99172_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 288 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA387476 and SRA study SRP107799. Searching any of these in the dataset finder brings you back here.
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+ 288 more — browse all 288 samples with per-sample file links →
- GSE278910 Pooled CRISPR screens with joint single-nucleus chromatin accessibility and transcriptome profiling [CUT&RUN] 30 samples
- GSE327821 Single-molecule, single-cell profiling of linked chromatin states [Single_cell_CoCUT&Tag] 200 samples
- GSE287902 BPTF regulstes androgen receptor activity by enhancing chromatin accessibility and stabilizing the AR-FOXA1 interaction [Cut&Run] 40 samples
- GSE316389 Chromatin accessibility and gene expression profiling of primary and metastatic ER+ breast cancer [ATAC-seq] 36 samples
- GSE325835 BATF3 regulates chromatin accessibility during CD8+ T lymphocyte differentiation 36 samples
- GSE327819 Single-molecule, single-cell profiling of linked chromatin states [Bulk_CoCUT&Tag] 35 samples
- GSE337829 Integrated single-cell profiling of RNA and DNA interactomes reveals targetable chromatin architectures in cancer [ChIP-Seq] 32 samples
- GSE270602 Comparative analysis of chromatin accessibility during chondrogenesis and in osteoarthritis 26 samples
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