YY1 is a structural regulator of enhancer-promoter loops
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 47 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 47 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE99521_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA388690 and SRA study SRP108380. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 47 more — browse all 47 samples with per-sample file links →
- GSE202126 Single-cell Total-RNA Profiling Unveils Regulatory Hubs of Transcription Factors 1089 samples shares regulator
- GSE325735 Transcriptomic reprogramming screen identifies SRSF1 as a regulator of aging 839 samples shares regulator
- GSE261742 Identification of epigenetic regulators of fibrotic transformation in cardiac fibroblasts through bulk and single-cell CRISPR screens 69 samples shares regulator
- GSE297013 Transcriptomic and Epigenomic Profiling of MYADM and RhoA Regulatory Networks in Metastatic Cancer Models 52 samples shares regulator
- GSE287346 MafB is a conserved transcriptional regulator of macrophage development and identity across tissues and species [CUT&Run] 33 samples shares regulator
- GSE266748 GATA6 is a Novel Regulator of Gene Expression and 3D Genome in Colorectal Cancer (RNA-Seq) 28 samples shares regulator
- GSE232887 A gene desert required for regulatory control of pleiotropic Shox2 expression and embryonic survival 17 samples shares regulator
- GSE296241 Sustained MYB activity drives emergent enhancer activation and precise enhancer-promoter interactions [ChIP-seq] 16 samples shares enhancer-promoter
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.