CITE-seq: Large scale simultaneous measuremnt of epitopes and transcriptomes in single cells

Direct links to NCBI, no account and no request form: the whole study as GSE100866_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 12 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA393315 and SRA study SRP111194. Searching any of these in the dataset finder brings you back here.

The sample list for this study is not cached yet. Press Sort into groups and it will be fetched from NCBI.

+ 12 more — browse all 12 samples with per-sample file links →

• GSE317605 A Phase II Trial of Pembrolizumab plus Granulocyte Macrophage Colony Stimulating Factor in Advanced Biliary Cancer [CITE-Seq] 168 samples
• GSE270387 Single cell profiling of peripheral blood mononuclear cells in diverse men with prostate cancer reveals lethal disease-associated immune signatures 165 samples
• GSE279392 Single-cell RNA and TCR sequencing from skin, blood and cerebral spinal fluid (CSF) samples from Degos disease patients 116 samples
• GSE314416 Immune-microbiome coordination defines interferon setpoints in healthy humans [CITE-seq and WMS] 108 samples
• GSE196198 Longitudinal single-cell multiomics data for different severity of COVID-19 100 samples
• GSE278951 Genome-wide DNA replication profiling and full-length total RNA sequencing from the same single cell [hTERT-RPE1 Whole-S] 98 samples
• GSE309593 Longitudinal Analysis of Multiple Myeloma: Therapeutic Response and Immune Microenvironment Dynamics in the Context of Tumor Heterogeneity [CITE-Seq] 91 samples
• GSE295491 Single cell landscape of MBL/CLL transition [MBL_CLL_GEO_DataSet3] 62 samples

Search all human RNA-seq datasets in GEO →