Systematic mapping of cell state trajectories, cell lineage, and perturbations in the zebrafish embryo using single cell transcriptomics
Direct links to NCBI, no account and no request form: the whole study as GSE112294_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 18 samples. Raw sequencing reads are also available from ENA.
Also filed as BioProject PRJNA445487 and SRA study SRP136369. Searching any of these in the dataset finder brings you back here.
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+ 18 more — browse all 18 samples with per-sample file links →
- GSE106587 Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis 446 samples
- GSE120643 Transcriptomics analysis of gene expression in wide type, ybx1 MO, pabpc1a MO zebrafish embryo sample. 28 samples
- GSE106466 Single-cell RNAseq (SMART-seq2) of wild-type (TLAB) and MZoep (tz57) zebrafish embryos at 50% epiboly stage 416 samples
- GSE147112 Zebrafish Ski7 tunes RNA levels during the oocyte-to-embryo transition 114 samples
- GSE65556 Transcriptomics analysis of gene expression in 10 embryo development stages of Danio rerio 10 samples
- GSE202639 Embryo-scale reverse genetics at single-cell resolution 8 samples
- GSE224113 A single-cell map of maternal and zygotic mRNA dynamics during cell-type specification in zebrafish embryos [SLAM-seq] 4 samples
- GSE162415 Temporal transcriptome in Pou5f3, Nanog and Sox19b mutant zebrafish embryos 232 samples
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