Atopic Dermatitis, Psoriasis and healthy control RNA-seq cohort
RNA-seq (gene expression) · human · 147 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 147 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE121212_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA496323 and SRA study SRP165679. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 147 more — browse all 147 samples with per-sample file links →
- GSE295540 RNA-seq result of human skin derived from patients with psoriasis and healthy controls. 13 samples shares psoriasis, healthy, control, rna-seq
- GSE327386 RNA-Seq of paired diagnosis and relapse AML specimens with healthy controls 130 samples shares healthy, control, rna-seq
- GSE337651 RNA-seq profiling of osteosarcoma and healthy bone samples from a Central Mexican cohort 14 samples shares healthy, rna-seq, cohort
- GSE330551 Th2-primed innate immune amplification defines a distinct atopic dermatitis endotype 174 samples shares dermatitis, atopic
- GSE328048 Single-cell transcriptome reveals keratinocyte subclusters that contribute to altered differentiation and inflammatory responses in atopic dermatitis 116 samples shares dermatitis, atopic
- GSE232127 Inflammatory signature of atopic dermatitis from tissue and systemic levels 75 samples shares dermatitis, atopic
- GSE158592 RNAseq analysis of blood from influenza infected patients and healthy controls SIG-2018 74 samples shares healthy, control
- GSE196350 RNAseq analysis of blood from influenza infected patients and healthy controls 69 samples shares healthy, control
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.