RNAseq analysis of blood from influenza infected patients and healthy controls
RNA-seq (gene expression) · human · 69 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 69 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Host response to influenza infections in human blood: association of influenza severity with host genetics and transcriptomic responseFrontiers in immunology · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE196350_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA804501 and SRA study SRP358939. Searching any of these in the dataset finder brings you back here.
The grouping that defines any comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Sample titles run SIG-1565 … SIG-9909 and carry no group information.
- GSM5876364 SIG-1565
- GSM5876365 SIG-2001
- GSM5876366 SIG-2004
- GSM5876367 SIG-2013
- GSM5876368 SIG-2025
- GSM5876369 SIG-2028
- GSM5876370 SIG-2038
- GSM5876371 SIG-2041
- GSM5876372 SIG-2059
- GSM5876373 SIG-2068
- GSM5876374 SIG-2077
- GSM5876375 SIG-2098
- GSM5876376 SIG-2101
- GSM5876377 SIG-2104
- GSM5876378 SIG-2107
- GSM5876379 SIG-2110
- GSM5876380 SIG-2113
- GSM5876381 SIG-2116
- GSM5876382 SIG-2119
- GSM5876383 SIG-2122
- GSM5876384 SIG-2125
- GSM5876385 SIG-2128
- GSM5876386 SIG-2131
- GSM5876387 SIG-2134
- GSM5876388 SIG-2137
- GSM5876389 SIG-2140
- GSM5876390 SIG-8017
- GSM5876391 SIG-9026
- GSM5876392 SIG-9027
- GSM5876393 SIG-9038
- GSM5876394 SIG-9040
- GSM5876395 SIG-9096
- GSM5876396 SIG-9102
- GSM5876397 SIG-9106
- GSM5876398 SIG-9109
- GSM5876399 SIG-9111
- GSM5876400 SIG-9113
- GSM5876401 SIG-9115
- GSM5876402 SIG-9117
- GSM5876403 SIG-9120
+ 29 more — browse all 69 samples with per-sample file links →
- GSE158592 RNAseq analysis of blood from influenza infected patients and healthy controls SIG-2018 74 samples shares influenza, infected, controls, healthy, blood
- GSE266852 Comparison of differential gene expression in blood PBMCs from healthy controls, patients with rheumatoid arthritis,and patients with lupus using single-cell transcriptome sequencing analysis. 10 samples shares controls, healthy, blood
- GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls 192 samples shares controls, healthy, blood
- GSE292338 RNAseq analysis of human neutrophils from healthy controls, people with frailty and people with rheumatoid arthritis 39 samples shares controls, healthy
- GSE309422 RNAseq analysis of human neutrophil mRNA from adults with SLE and age-matched healthy controls 21 samples shares controls, healthy
- GSE281592 Transcriptome Analysis in Human Breast Milk and Blood in a Randomized Trial after Inactivated or Attenuated Influenza Immunization 69 samples shares influenza, blood
- GSE302306 Transcriptomic Profiling of CD66b+ Neutrophils from Healthy Controls and Cardiac Surgery Patients with Vasoplegic and Septic Shock Syndromes Across Multiple Timepoints 68 samples shares controls, healthy
- GSE161245 Comparison of bronchial epithelial cells obtained by bronchoscopy from mild asthma patients, moderate asthma patients, severe asthma patients and healthy controls 55 samples shares controls, healthy
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.