Long non-coding and protein-coding RNA profiling using strand-specific RNA-seq in human hypertrophic cardiomyopathy
RNA-seq (gene expression) · human · 37 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 37 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE130036_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA522931 and SRA study SRP186138. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 37 more — browse all 37 samples with per-sample file links →
- GSE331527 Engineered heart tissues facilitate functional characterization of noncoding variants implicated in Hypertrophic and Dilated Cardiomyopathy [Bulk RNA-Seq] 15 samples shares cardiomyopathy, hypertrophic, rna-seq
- GSE249925 Human Hypertrophic Cardiomyopathy mRNA Profiling. 120 samples shares cardiomyopathy, hypertrophic
- GSE302553 Pathogenetic mechanisms of muscle-specific ribosomes in dilated cardiomyopathy (AC16 RNA-seq) 42 samples shares cardiomyopathy, rna-seq
- GSE289628 EPAS1 induction drives myocardial degeneration in Desmoplakin-cardiomyopathy [RNA-seq] 16 samples shares cardiomyopathy, rna-seq
- GSE262876 Cardiac Organoids for Modeling Hypertrophic Cardiomyopathy 16 samples shares cardiomyopathy, hypertrophic
- GSE337273 Transcriptomic signature of Human Cardiac Fibroblast in Hypertrophic Obstructive Cardiomyopathy 15 samples shares cardiomyopathy, hypertrophic
- GSE276210 Beta-Adrenergic Stimulation and MYH7 G256E Mutant Gene Dosage Drive Hypertrophic Cardiomyopathy Phenotype Penetrance 14 samples shares cardiomyopathy, hypertrophic
- GSE271775 Cellular Crosstalk Drives Hypertrophic Cardiomyopathy in LZTR1 Deficiency 12 samples shares cardiomyopathy, hypertrophic
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.