Serial Sampling of the Small Airway Epithelium Over 1 Year in the Same Individuals to Identify “Public” Genes Commonly Dysregulated by Smoking
Expression microarray · human · 131 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Samples
- 131 samples: 113 distinct titles, 1 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE133924_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA553135 and SRA study SRP197342. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 131 sample titles: 113 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM549681 DGM-00029 [gene_expr]
- GSM549682 DGM-00030
- GSM549683 DGM-00035 [gene_expr]
- GSM549684 DGM-00036 [gene_expr]
- GSM549685 DGM-00041 [gene_expr]
- GSM549686 DGM-00044 [gene_expr]
- GSM549687 DGM-00052 [gene_expr]
- GSM549688 DGM-00073 [gene_expr]
- GSM549689 DGM-00069 [gene_expr]
- GSM549690 DGM-00072 [gene_expr]
- GSM549691 DGM-00078 [gene_expr]
- GSM549692 DGM-00080 [gene_expr]
- GSM549694 DGM-00123 [gene_expr]
- GSM549695 DGM-00244
- GSM549696 DGM-00249
- GSM549697 DGM-00268_sm
- GSM549698 DGM-00416
- GSM549699 DGM-00342_sm
- GSM549700 DGM-00465
- GSM549701 DGM-00530
- GSM549702 DGM-00529 [gene_expr]
- GSM549703 DGM-00548
- GSM549704 DGM-00551 [gene_expr]
- GSM549705 DGM-00553 [gene_expr]
- GSM549706 DGM-00568_sm
- GSM549707 DGM-00625
- GSM549708 DGM-00661
- GSM549709 DGM-00685
- GSM549710 DGM-00696 [gene_expr]
- GSM549711 DGM-00757
- GSM549712 DGM-00751 [gene_expr]
- GSM549713 DGM-00774 [gene_expr]
- GSM549714 DGM-00778
- GSM549715 DGM-00785_sm
- GSM549716 DGM-00795
- GSM549717 DGM-00814 [gene_expr]
- GSM549718 DGM-00906 [gene_expr]
- GSM549719 DGM-00936
- GSM549720 DGM-01141
- GSM549721 DGM-01150
+ 91 more — browse all 131 samples with per-sample file links →
- GSE130967 Serial Sampling of the Small Airway Epithelium Over 1 Year in the Same Individuals to Identify “Public” Genes Commonly Dysregulated by Smoking [RNA-Seq] 44 samples shares dysregulated, individuals, epithelium, sampling, commonly, smoking, serial, airway
- GSE237252 Transcriptional adaptation of human airway epithelium upon cigarette smoking 77 samples shares epithelium, smoking, airway
- GSE135624 Epigenetic and Post-transcriptional Regulation of LYPD2 Modulates Smoking-associated Phenotype via CHRNA7 and DNMT1 in the Human Airway Epithelium 66 samples shares epithelium, smoking, airway
- GSE309705 Transcriptomic Profiling of Bronchial Epithelium Reveals Dysregulated Interferon and Inflammatory Responses to Rhinovirus in Exacerbation-Prone Pediatric Asthma 274 samples shares dysregulated, epithelium
- GSE309698 Transcriptomic Profiling of Bronchial Epithelium Reveals Dysregulated Interferon and Inflammatory Responses to Rhinovirus in Exacerbation-Prone Pediatric Asthma [RNA-Seq] 246 samples shares dysregulated, epithelium
- GSE302095 Validation of bronchial airway gene expression associated with bronchiectasis in nasal epithelium 132 samples shares epithelium, airway
- GSE306517 Transcriptomic and functional responses of the cystic fibrosis airway epithelium to CFTR modulator therapy 76 samples shares epithelium, airway
- GSE306950 Dysregulated NK Cell Activation and Myeloid-Lymphoid Imbalance Underpin COPD Progression: Insights from High-Dimensional Immune Profiling and Smoking-Induced Immune Remodeling 35 samples shares dysregulated, smoking
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.