Fibroblasts associated with tumors refractory to anti-VEGF treatment
Expression microarray · mouse · 15 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Mus musculus (mouse)
- Samples
- 15 samples: 5 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Read the full summary ↓
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE13549_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA110729. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 15 samples.
How we read this: 5 replicated groups read from 15 sample titles; they account for 15 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM341707 9414 NSF rep1 9414 NSF
- GSM341708 9414 NSF rep2 9414 NSF
- GSM341709 9414 NSF rep3 9414 NSF
- GSM341710 9415 TAF-el4 rep1 9415 TAF-el4
- GSM341711 9415 TAF-el4 rep2 9415 TAF-el4
- GSM341712 9415 TAF-el4 rep3 9415 TAF-el4
- GSM341713 9416 TAF-tib42 rep1 9416 TAF-tib42
- GSM341714 9416 TAF-tib42 rep2 9416 TAF-tib42
- GSM341715 9416 TAF-tib42 rep3 9416 TAF-tib42
- GSM341716 9417 TAF-tib48 rep1 9417 TAF-tib48
- GSM341717 9417 TAF-tib48 rep2 9417 TAF-tib48
- GSM341718 9417 TAF-tib48 rep3 9417 TAF-tib48
- GSM341719 9418 TAF-tib6 rep1 9418 TAF-tib6
- GSM341720 9418 TAF-tib6 rep2 9418 TAF-tib6
- GSM341721 9418 TAF-tib6 rep3 9418 TAF-tib6
- GSE21755 Rapamycin effect on Wild Type and TSC deficient Mouse Embryonic Fibroblasts : Time Course 25 samples shares fibroblasts
- GSE22292 Gene expression in mouse neonatal cardiomyocytes, cardiac fibroblasts, reprogramming failed GFP- cells, and GFP+ iCMs 18 samples shares fibroblasts
- GSE249630 Modeling T cell temporal response to cancer immunotherapy rationalize development of combinatorial treatments protocols 1372 samples shares treatment
- GSE229916 Pericytes and perivascular fibroblasts contribute to central nervous system fibrosis in a region dependent manner 832 samples shares fibroblasts
- GSE261670 ASOs are an effective treatment for disease-associated oligodendrocyte signatures in premanifest and symptomatic SCA3 mice 74 samples shares treatment
- GSE332646 Bulk RNA-seq of juvenile mouse liver following NDMA or saline treatment in WT and Mgmt-/- genotypes across multiple timepoints 214 samples shares treatment
- GSE266899 The GLP-1R agonist semaglutide reshapes pancreatic cancer associated fibroblasts reducing collagen hydroxyprolination and favoring immune infiltration. 18 samples shares fibroblasts
- GSE268790 Evidence that inflammation-associated fibroblasts (IAFs) originate from Edil3 stromal "mesitocytes" in the colon following radiation injury 16 samples shares fibroblasts
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.