Temporal transcriptome in Pou5f3 and Sox19b mutant zebrafish embryos

Direct links to NCBI, no account and no request form: the whole study as GSE137424_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 101 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA565416 and SRA study SRP221597. Searching any of these in the dataset finder brings you back here.

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• GSE162415 Temporal transcriptome in Pou5f3, Nanog and Sox19b mutant zebrafish embryos 232 samples
• GSE130944 Chromatin accessibility established by Pou5f3, Sox19b and Nanog primes genes for activity during zebrafish genome activation. 26 samples
• GSE292682 Transcriptome profiling of tendon fibroblasts at the onset of embryonic muscle contraction reveals novel force-responsive genes. FAC sorted tenocytes from 36 hpf vs. 48 hpf zebrafish embryos bulk RNAseq dataset 11 samples
• GSE106466 Single-cell RNAseq (SMART-seq2) of wild-type (TLAB) and MZoep (tz57) zebrafish embryos at 50% epiboly stage 416 samples
• GSE83395 Transcriptome dynamics in early zebrafish embryogenesis determined by high-resolution time course analysis 180 samples
• GSE84601 RNA-seq analysis comparing WT, Rad21 MO and CTCF MO zebrafish embryos at stages (2.5, 3.3, 4.5, 5.3, 10 hpf) pre and post ZGA (zygotic genome activation) 45 samples
• GSE148391 Early zebrafish development time course transcriptome 30 samples
• GSE106474 Drop-seq analysis of wild-type (TLAB) zebrafish embryos from high to 6-somite stage (12 timepoints) 28 samples

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