Profiling anagen skin in control and Fgf5 mutant mice
RNA-seq (gene expression) · mouse · 20 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 20 samples: 4 × 170118C_HF_del_1 vs 4 × 170118C_HF_del_2 vs 4 × 170118C_HF_del_3 vs 4 × 170118C_HF_del_4Groups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE144322_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA603365 and SRA study SRP245424. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 16 samples.
How we read this: 4 replicated groups read from 20 sample titles; they account for 16 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM4285854 170118B_HF_ctrl_1_1
- GSM4285855 170118B_HF_ctrl_2_1
- GSM4285856 170118B_HF_ctrl_3_1
- GSM4285857 170118B_HF_ctrl_4_1
- GSM4285858 170118C_HF_del_1_1 170118C_HF_del_1
- GSM4285859 170118C_HF_del_1_2 170118C_HF_del_1
- GSM4285860 170118C_HF_del_1_3 170118C_HF_del_1
- GSM4285861 170118C_HF_del_1_4 170118C_HF_del_1
- GSM4285862 170118C_HF_del_2_1 170118C_HF_del_2
- GSM4285863 170118C_HF_del_2_2 170118C_HF_del_2
- GSM4285864 170118C_HF_del_2_3 170118C_HF_del_2
- GSM4285865 170118C_HF_del_2_4 170118C_HF_del_2
- GSM4285866 170118C_HF_del_3_1 170118C_HF_del_3
- GSM4285867 170118C_HF_del_3_2 170118C_HF_del_3
- GSM4285868 170118C_HF_del_3_3 170118C_HF_del_3
- GSM4285869 170118C_HF_del_3_4 170118C_HF_del_3
- GSM4285870 170118C_HF_del_4_1 170118C_HF_del_4
- GSM4285871 170118C_HF_del_4_2 170118C_HF_del_4
- GSM4285872 170118C_HF_del_4_3 170118C_HF_del_4
- GSM4285873 170118C_HF_del_4_4 170118C_HF_del_4
- GSE298064 Metabolic control of innate immune activation in TET2-mutant clonal hematopoiesis 26 samples shares control, mutant
- GSE283201 Comparative gene expression profiling analysis of hippocampus and liver RNA-seq data for young (3-month-old) and aged (22-month-old) WT mice in both control and ethanol feeding conditions. 32 samples shares control
- GSE266882 Analysis of gastrocnemius muscle transcriptome from chow fed control and skeletal muscle HuR knockout mice with and without voluntary wheel running 56 samples shares control
- GSE233491 Bulk TCR-sequencing of various tissues in mice treated with 2% DSS or H2O control. 45 samples shares control
- GSE325832 RNA-seq analysis of skeletal muscle from control (Cre) and Terf2 knockout (KO) mice in gastrocnemius-plantaris-soleus (GPS) and tibialis anterior (TA) 35 samples shares control
- GSE306925 Aberrant mRNA Splicing and Impaired Hippocampal Neurogenesis in Grin2b Mutant Mice [grin2b_snRNAseq] 32 samples shares mutant
- GSE270727 Analysis of striatal zinc finger protein (ZFP) repression of mutant Huntingtin (HTT) in the zQ175DN knock-in mouse model of Huntington's disease (bulk RNA-seq) 233 samples shares mutant
- GSE296071 Selective targeting of mutant huntingtin intron-1 improves rescue provided by antisense oligonucleotides in HTT.Q111/+ mice 30 samples shares mutant
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.