Comparative gene expression profiling analysis of hippocampus and liver RNA-seq data for young (3-month-old) and aged (22-month-old) WT mice in both control and ethanol feeding conditions.
RNA-seq (gene expression) · mouse · 32 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 32 samples: 8 conditions, mostly with about 4 replicates eachGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE283201_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1192316 and SRA study SRP548442. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 32 samples.
How we read this: 8 replicated groups read from 32 sample titles; they account for 32 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8657703 H-Y-EDE1 H-Y-EDE
- GSM8657704 H-Y-EDE2 H-Y-EDE
- GSM8657705 H-Y-EDE3 H-Y-EDE
- GSM8657706 H-Y-EDE4 H-Y-EDE
- GSM8657707 H-Y-CDM1 H-Y-CDM
- GSM8657708 H-Y-CDM2 H-Y-CDM
- GSM8657709 H-Y-CDM3 H-Y-CDM
- GSM8657710 H-Y-CDM4 H-Y-CDM
- GSM8657711 H-A-EDE1 H-A-EDE
- GSM8657712 H-A-EDE2 H-A-EDE
- GSM8657713 H-A-EDE3 H-A-EDE
- GSM8657714 H-A-EDE4 H-A-EDE
- GSM8657715 H-A-CDM1 H-A-CDM
- GSM8657716 H-A-CDM2 H-A-CDM
- GSM8657717 H-A-CDM3 H-A-CDM
- GSM8657718 H-A-CDM4 H-A-CDM
- GSM8657719 L-Y-EDE1 L-Y-EDE
- GSM8657720 L-Y-EDE2 L-Y-EDE
- GSM8657721 L-Y-EDE3 L-Y-EDE
- GSM8657722 L-Y-EDE4 L-Y-EDE
- GSM8657723 L-Y-CDM1 L-Y-CDM
- GSM8657724 L-Y-CDM2 L-Y-CDM
- GSM8657725 L-Y-CDM3 L-Y-CDM
- GSM8657726 L-Y-CDM4 L-Y-CDM
- GSM8657727 L-A-EDE1 L-A-EDE
- GSM8657728 L-A-EDE2 L-A-EDE
- GSM8657729 L-A-EDE3 L-A-EDE
- GSM8657730 L-A-EDE4 L-A-EDE
- GSM8657731 L-A-CDM1 L-A-CDM
- GSM8657732 L-A-CDM2 L-A-CDM
- GSM8657733 L-A-CDM3 L-A-CDM
- GSM8657734 L-A-CDM4 L-A-CDM
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- GSE319614 Bulk RNA-seq transcriptome profiling of hippocampus across 17 autism spectrum disorder mouse models 269 samples shares hippocampus, rna-seq
- GSE292224 Distinct molecular mechanisms of stress habituation in the mouse hippocampus [bulk RNA-seq] 190 samples shares hippocampus, rna-seq
- GSE117677 Influence of low-input RNA from FF and FFPE samples on gene expression quantification by NanoString, microarray and RNA-seq: a comparative study [RNA-seq] 66 samples shares comparative, rna-seq
- GSE278035 RNA-Seq of hippocampus in founder mice 64 samples shares hippocampus, rna-seq
- GSE205592 Obesity-instructed TREM2-high macrophages identified by comparative analysis of diabetic mouse and human kidney at single-cell resolution [scRNA-seq: DKD_mouse] 41 samples shares comparative, rna-seq
- GSE272694 Crnic Institute - Trisomy 21 Model Atlas: PolyA RNA-seq from 6-month old mouse brain hippocampus tissue ± JAK1/3 inhibition with tofacitinib 34 samples shares hippocampus, rna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.