Transcriptional regulation of liver lipotoxicity in non-alcoholic steatohepatitis
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 52 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 52 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE173736_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA726929 and SRA study SRP318203. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 52 more — browse all 52 samples with per-sample file links →
- GSE189600 Hepatocytes demarcated by EphB2 contribute to the progression of non-alcoholic steatohepatitis 21 samples shares steatohepatitis, non-alcoholic
- GSE200812 An atlas of the human liver diurnal transcriptome and its perturbation by hepatitis C virus infection 56 samples shares liver
- GSE275942 Estrogen Receptor 1 Signaling in Hepatic Stellate Cells Designates Resistance to Liver Fibrosis 11 samples shares liver
- GSE302338 Transcriptional landscape of MYCN-driven liver tumors 38 samples shares liver
- GSE296748 Dp16 liver transcriptome 78 samples shares liver
- GSE305923 exoWNT3A/RSPO1 improves HE to LPC differentiation, hepatic organoids growth, and different acute and chronic liver injuries. 72 samples shares liver
- GSE25425 MicroRNAs are Transported in Plasma and Delivered to Recipient Cells by High-Density Lipoproteins 45 samples shares liver
- GSE288077 Metabolic dysfunction-associated steatotic liver disease may increase intrahepatic interferon gene signatures in patients with chronic hepatitis B 35 samples shares liver
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.