The Ewing Sarcoma Cell Line Atlas (ESCLA)
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 306 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Topic
- Ewing sarcomaThis series is part of our curated briefing on it.
- Samples
- 306 samples
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE176339_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA735784 and SRA study SRP323252. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 306 more — browse all 306 samples with per-sample file links →
- GSE289118 New Cell lines Expanding the Diversity of Ewing Sarcoma Models 44 samples same disease briefing · shares sarcoma, ewing, line
- GSE248354 Differences in gene expression between myxoid liposarcoma and Ewing sarcoma cell lines 20 samples same disease briefing · shares sarcoma, ewing, line
- GSE263430 Effect of HOXC6 deletion on gene expression in Ewing Sarcoma cell line RD-ES. 9 samples same disease briefing · shares sarcoma, ewing, line
- GSE155456 HDGF ChIP-Seq in Ewing sarcoma cell line RD-ES 1 samples same disease briefing · shares sarcoma, ewing, line
- GSE299137 Autocrine TGFβ2 enforces a transcriptionally hybrid cell state in Ewing sarcoma 48 samples same disease briefing · shares sarcoma, ewing
- GSE229906 Chimeric protein EWS::FLI1 drives cell proliferation in Ewing Sarcoma via aberrant expression of KCNN1/SK1 and dysregulation of calcium signaling 45 samples same disease briefing · shares sarcoma, ewing
- GSE299432 Transcriptional Rewiring of BET Inhibitor Treated Ewing Sarcoma Cells Augments their Dependency on Focal Adhesion Kinase 30 samples same disease briefing · shares sarcoma, ewing
- GSE291136 Dynamic modelling of EWS::FLI1 fluctuations reveals molecular determinants of phenotypic tumor plasticity and prognosis in Ewing sarcoma 222 samples same disease briefing · shares sarcoma, ewing
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.