HDGF ChIP-Seq in Ewing sarcoma cell line RD-ES
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 1 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Topic
- Ewing sarcomaThis series is part of our curated briefing on it.
- Samples
- 1 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE155456_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA649791 and SRA study SRP274384. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 1 more — browse all 1 samples with per-sample file links →
- GSE263430 Effect of HOXC6 deletion on gene expression in Ewing Sarcoma cell line RD-ES. 9 samples same disease briefing · shares rd-es, sarcoma, ewing, line
- GSE266666 Select chromatin complexes are essential drivers of pathogenic enhancer activity and gene expression in Ewing sarcoma [ChIP-Seq] 101 samples same disease briefing · shares chip-seq, sarcoma, ewing
- GSE176339 The Ewing Sarcoma Cell Line Atlas (ESCLA) 306 samples same disease briefing · shares sarcoma, ewing, line
- GSE289118 New Cell lines Expanding the Diversity of Ewing Sarcoma Models 44 samples same disease briefing · shares sarcoma, ewing, line
- GSE248354 Differences in gene expression between myxoid liposarcoma and Ewing sarcoma cell lines 20 samples same disease briefing · shares sarcoma, ewing, line
- GSE260602 Cell context is the third axis of synergy for ATR inhibition and cisplatin in Ewing sarcoma 2 samples same disease briefing · shares sarcoma, ewing
- GSE235218 Differential chromatin landscape in myxoid liposarcoma and Ewing sarcoma 6 samples same disease briefing · shares sarcoma, ewing
- GSE267220 STAG2 loss in Ewing sarcoma alters enhancer-promoter contacts dependent and independent of EWS::FLI1 4 samples same disease briefing · shares sarcoma, ewing
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.