Next Generation Sequencing of Oocyte and Associated Cumulus Cells Pools from Preovualtory Follicles in Bovine
RNA-seq (gene expression) · Bos taurus · 33 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Bos taurus
- Samples
- 33 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE176344_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA735854 and SRA study SRP323117. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 33 more — browse all 33 samples with per-sample file links →
- GSE36605 Transcriptional profiling of cumulus cells differentiation throughout oocyte competence acquisition in the bovine ovarian follicles. 17 samples shares follicles, cumulus, oocyte, bovine
- GSE330668 A transcriptomic map of ligand-receptor interactions within bovine antral follicles reveals commonality and redundant strategies for intercellular communications and predicts intrafollicular factors for improving oocyte quality 90 samples shares follicles, oocyte, bovine
- GSE308522 Extracellular vesicles derived from antral follicles significantly change the transcriptional profile of cumulus cells and oocytes during pre-in vitro maturation in cattle 40 samples shares follicles, cumulus, oocyte
- GSE79760 Cumulus cell gene expression associated with pre-ovulatory acquisition of developmental competence in bovine oocytes 18 samples shares cumulus, oocyte, bovine
- GSE79886 Bovine cumulus cells transcriptome in relation with oocyte chromatin configuration of the germinal vesicle 12 samples shares cumulus, oocyte, bovine
- GSE31361 Gene expression profiling of in vitro matured bovine oocytes cultivated with or without cumulus cells. 8 samples shares cumulus, oocyte, bovine
- GSE31261 Transcriptional profiling of cumulus cells entoured the oocyte after in vitro or in vivo maturation in bovine (Bos taurus) 8 samples shares cumulus, oocyte, bovine
- GSE99678 Functional signaling and gene regulatory networks between the oocyte and the surrounding cumulus cells 48 samples shares cumulus, oocyte
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.