The RANBP2/Importin-7-FOXO1 axis provides superior cold protection to aid islet transplantation
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 89 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 89 samples: 78 distinct titles, 5 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Cold-induced FOXO1 nuclear transport aids cold survival and tissue storageNature communications · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE185152_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA767830 and SRA study SRP337149. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 89 sample titles: 78 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM5578478 ATAC_H1_4C_rep1
- GSM5578479 ATAC_H1_4C_rep2
- GSM5578480 ATAC_H1_37C_rep1
- GSM5578481 ATAC_H1_37C_rep2
- GSM6627972 human 37c passage 46
- GSM6627973 human 37c passage 47
- GSM6627974 human 37c passage 60
- GSM6627975 human 37c passage 62
- GSM6627976 human 4c 4h 37c 2h passage 46
- GSM6627977 human 4c 4h 37c 2h passage 47
- GSM6627978 human 4c 4h 37c 2h passage 60
- GSM6627979 human 4c 4h 37c 2h passage 62
- GSM6627980 human 4c 4h passage 46
- GSM6627981 human 4c 4h passage 47
- GSM6627982 human 4c 4h passage 60
- GSM6627983 human 4c 4h passage 62
- GSM6627984 CUT&Tag_FOXO1_H1_4C
- GSM6627985 CUT&Tag_FOXO1_H1_4C b
- GSM6627986 CUT&Tag_FOXO1_H1_37C
- GSM6627987 CUT&Tag_FOXO1_H1_37C b
- GSM6627988 CUT&Tag_IgG_H1
- GSM7866762 496MUS
- GSM7866763 497MUS
- GSM7866764 B679MUS
- GSM7866765 3MUS
- GSM7866766 498MUS
- GSM7866767 AB45MUS
- GSM7866768 Aa127MUS
- GSM7866769 405MUS
- GSM7866770 B652MUS
- GSM7866771 Aa121MUS
- GSM7866772 494MUS
- GSM7866773 500MUS
- GSM7866774 2MUS
- GSM7866775 T781MUS
- GSM7866776 4MUS
- GSM7866777 Ab22MUS
- GSM7866778 499MUS
- GSM7866779 496BAT
- GSM7866780 497BAT
+ 49 more — browse all 89 samples with per-sample file links →
- GSE279626 PGLYRP-1 mediated intracellular peptidoglycan detection promotes mucosal protection 82 samples shares protection
- GSE305911 Engineered thoracic spinal cord organoids for transplantation after spinal cord injury 26 samples shares transplantation
- GSE253623 Therapeutic potential of human microglial transplantation in a chimeric model of CSF1R-related leukoencephalopathy 13 samples shares transplantation
- GSE285564 Single-cell transcriptome comparison of myeloid cells’ in the retina in response to transplantation of human stem-cell derived neurons and to ocular damage reveals the reversibility of the microglia activation. 3 samples shares transplantation
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.