Ageing-Related Changes to H3K4me3, H3K27ac and H3K27me3 in Purified Mouse Neurons
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 43 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 43 samples: 43 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Ageing-Related Changes to H3K4me3, H3K27ac, and H3K27me3 in Purified Mouse NeuronsCells · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE190102_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA798693 and SRA study SRP355799. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 43 sample titles: 43 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM5825050 363 WT 3M H3K4me3
- GSM5825051 517 WT 3M H3K4me3
- GSM5825052 513 WT 3M H3K4me3
- GSM5825053 512 WT 3M H3K4me3
- GSM5825054 163736 WT 6M H3K4me3
- GSM5825055 325 WT 6M H3K4me3
- GSM5825056 156508 WT 12M H3K4me3
- GSM5825057 155668 WT 12M H3K4me3
- GSM5825058 154468 WT 24M H3K4me3
- GSM5825059 154469 WT 24M H3K4me3
- GSM5825060 158027 WT 24M H3K4me3
- GSM5825061 158028 WT 24M H3K4me3
- GSM5825062 363 WT 3M H3K27ac
- GSM5825063 512 WT 3M H3K27ac
- GSM5825064 513 WT 3M H3K27ac
- GSM5825065 517 WT 3M H3K27ac
- GSM5825066 17 WT 6M H3K27ac
- GSM5825067 325 WT 6M H3K27ac
- GSM5825068 163736 WT 6M H3K27ac
- GSM5825069 155668 WT 12M H3K27ac
- GSM5825070 156508 WT 12M H3K27ac
- GSM5825071 156509 WT 12M H3K27ac
- GSM5825072 154468 WT 24M H3K27ac
- GSM5825073 158028 WT 24M H3K27ac
- GSM5825074 512 WT 3M TI
- GSM5825075 163734 WT 6M TI
- GSM5825076 155688 WT 12M TI
- GSM5825077 158027 WT 24M TI
- GSM8514837 363 WT 3M H3K27me3
- GSM8514838 368 WT 3M H3K27me3
- GSM8514839 512 WT 3M H3K27me3
- GSM8514840 513 WT 3M H3K27me3
- GSM8514841 517 WT 3M H3K27me3
- GSM8514842 155668 WT 12M H3K27me3
- GSM8514843 155688 WT 12M H3K27me3
- GSM8514844 156508 WT 12M H3K27me3
- GSM8514845 156509 WT 12M H3K27me3
- GSM8514846 157306 WT 12M H3K27me3
- GSM8514847 154468 WT 24M H3K27me3
- GSM8514848 154469 WT 24M H3K27me3
+ 3 more — browse all 43 samples with per-sample file links →
- GSE222133 CUT&Tag analysis of H3K4me3, H3K27Ac,H2A119Ub and H3K27me3 in treated KPC1199 murine PDAC cell line 12 samples shares h3k27me3, h3k4me3, h3k27ac
- GSE229903 CUT&Tag analysis of H3K4me3, H3K27Ac,H2A119Ub, H3K27me3 and H3K36me3 in KPC1199 murine PDAC cell line 10 samples shares h3k27me3, h3k4me3, h3k27ac
- GSE261412 Acute hormonal signaling-induced 3D chromatin loop reorganization controls adipocyte thermogenesis [ChIP-Seq mouse, H3K27ac, H3K4me3, H2AZ] 24 samples shares h3k4me3, h3k27ac
- GSE255571 Chromatin remodeler CHD7 regulates neurogenic gene expression via controlling chromatin accessibility and modifications of histone marks H3K27me3 and H3K4me3 [Mouse CUT&Tag] 10 samples shares h3k27me3, h3k4me3
- GSE73952 Distinct features in establishing H3K4me3 and H3K27me3 in pre-implantation embryos 67 samples shares h3k27me3, h3k4me3
- GSE317929 Effect of intrauterine growth restriction on the H3K4me3, H3K9ac, H3K27ac and H3k9me3 histione modification of microglia in hippocampus 34 samples shares h3k4me3, h3k27ac
- GSE276779 YAP-Driven Malignant Reprogramming of Oral Epithelial Stem Cells, CUT&TAG sequencing for YAP, H3K27ac, and H3K27me3 32 samples shares h3k27me3, h3k27ac
- GSE260577 A critical role for Hepatocyte Nuclear Factor 4 alpha in polymicrobial sepsis-associated metabolic reprogramming and death: H3K27ac and H3K4me3 after CLP sepsis model 18 samples shares h3k4me3, h3k27ac
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.