Identification of a micro-RNA signature of lung stretch
Non-coding RNA profiling · human · 26 samples
- What it is
- Non-coding RNA profilingLevels of RNAs that do not code for proteins, such as miRNA or lncRNA.
- Organism
- Homo sapiens (human)
- Samples
- 26 samples: 22 distinct titles, 2 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Prediction of lung overdistension during mechanical ventilation using micro-RNA and gene expressionIntensive care medicine experimental · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE197753_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
Also filed as BioProject PRJNA811964 and SRA study SRP362174. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 26 sample titles: 22 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM5278808 BE01A: human lung ventilated with CPAP
- GSM5278809 BE11A: human lung ventilated with CPAP
- GSM5278810 BE25A: human lung ventilated with high tidal volume
- GSM5278811 BE27A: human lung ventilated with high tidal volume
- GSM5278812 BE29A: human lung ventilated with CPAP
- GSM5278813 BE31A: human lung ventilated with high tidal volume
- GSM5929509 Bronchoalveolar lavage fluid from mechanically ventilated patient with cardiogenic shock [1702-A032215]
- GSM5929510 Bronchoalveolar lavage fluid from mechanically ventilated patient with cardiogenic shock [1701-A032216]
- GSM5929511 Bronchoalveolar lavage fluid from mechanically ventilated patient with cardiogenic shock [1701-A032217]
- GSM5929512 Bronchoalveolar lavage fluid from mechanically ventilated patient with cardiogenic shock [1701-A032218]
- GSM5929513 Bronchoalveolar lavage fluid from mechanically ventilated patient with cardiogenic shock [1702-A032219]
- GSM5929514 Bronchoalveolar lavage fluid from mechanically ventilated patient with cardiogenic shock [1702-A032220]
- GSM5929515 Bronchoalveolar lavage fluid from mechanically ventilated patient with cardiogenic shock [1701-A032221]
- GSM5929516 Bronchoalveolar lavage fluid from mechanically ventilated patient with cardiogenic shock [1701-A032222]
- GSM5929517 Bronchoalveolar lavage fluid from mechanically ventilated patient with cardiogenic shock [1701-A032223]
- GSM5929518 Bronchoalveolar lavage fluid from mechanically ventilated patient with cardiogenic shock [1701-A032224]
- GSM5929519 Bronchoalveolar lavage fluid from mechanically ventilated patient with cardiogenic shock [1701-A032225]
- GSM5929520 Bronchoalveolar lavage fluid from mechanically ventilated patient with cardiogenic shock [1702-A032226]
- GSM5929521 Bronchoalveolar lavage fluid from mechanically ventilated patient with cardiogenic shock [1702-A032229]
- GSM5929522 Bronchoalveolar lavage fluid from mechanically ventilated patient with cardiogenic shock [1701-A032230]
- GSM7469167 BE01A_mRNA
- GSM7469168 BE11A_mRNA
- GSM7469169 BE25A_mRNA
- GSM7469170 BE27A_mRNA
- GSM7469171 BE29A_mRNA
- GSM7469172 BE31A_mRNA
- GSE333596 Single-Cell RNA Sequencing Identifies Stem-Like Subpopulations and Their Gene Signature in Lung Adenocarcinoma Progression 12 samples shares signature, lung
- GSE215274 Identification of Whole Blood Gene Expression Signature to Predict the Therapeutic Effect of Nintedanib in Idiopathic Pulmonary Fibrosis 177 samples shares signature
- GSE299043 Multimodal profiling reveals tissue-directed signatures of human immune cells altered with age 654 samples shares signature
- GSE271689 Enhancing Immunotherapy Outcomes: Spatial Multi-Omics Predictive Models for Non-Small Cell Lung Cancer 586 samples shares lung
- GSE301181 Identification of IPF Specific Genes Expressed by Lung Tissue - Derived Fibroblasts Using Next Generation Sequencing 43 samples shares lung
- GSE243013 A single-cell atlas of immune heterogeneity in anti-PD1-treated non-small cell lung cancer 243 samples shares lung
- GSE287022 Cutaneous adipose tissue has a strong inflammatory signature in psoriasis patients, and it is partly IL-17 dependent. 241 samples shares signature
- GSE13425 Expression data from ALL patients included in the set used to construct a classification signature (COALL cohort) 190 samples shares signature
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.