Transdermal nanolipoplex simultaneously inhibits subcutaneous melanoma growth and suppresses systemically metastatic melanoma by activating host immunity
RNA-seq (gene expression) · mouse · 15 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 15 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE197791_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA812046 and SRA study SRP362211. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 15 more — browse all 15 samples with per-sample file links →
- GSE298345 Gpc3 Selectively Suppresses Subcutaneous Adipogenesis in Diet-Induced Obesity 12 samples shares subcutaneous, suppresses
- GSE295176 FAM114A1 Promotes Immune Evasion of Triple-negative Breast Cancer by Simultaneously Activating PI3K/AKT Signaling and Disrupting E2F4-condensate Formation 2 samples shares simultaneously, activating
- GSE261448 Early transcriptomic response of innate immune cells to subcutaneous BCG vaccination of mice 24 samples shares subcutaneous
- GSE238223 Systemically primed central memory T cells source intranasally boosted tissue-resident memory T cells against melanoma lung metastasis 24 samples shares systemically
- GSE319353 Transient epigenetic changes promote cardiomyocyte differentiation of the subcutaneous adipose stromal vascular fraction 21 samples shares subcutaneous
- GSE267767 Myeloid lineage (CD45+ CD11b+ cells) analysis sorted from stromal vascular fraction of visceral and subcutaneous adiposetissue in mice in different diet conditions or after rosiglitazone treatment 16 samples shares subcutaneous
- GSE291587 Bulk RNA-seq analysis of molecular characteristics induced by Aoah over-expression in B16 subcutaneous implanted tumors 12 samples shares subcutaneous
- GSE301349 From subcutaneous to orthotopic: Bridging the gap to human disease in lung cancer research [mouse] 12 samples shares subcutaneous
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.