Bulk RNA-seq analysis of molecular characteristics induced by Aoah over-expression in B16 subcutaneous implanted tumors
RNA-seq (gene expression) · mouse · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples: 4 × B16mhgp100-Aoah vs 4 × B16mhgp100-Vecto vs 2 × B16F10-Aoah vs 2 × B16F10-VectoGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Cancer immunology data engine reveals secreted AOAH as a potential immunotherapyCell · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE291587_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1234190 and SRA study SRP569306. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 12 samples.
How we read this: 4 replicated groups read from 12 sample titles; they account for 12 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8838091 B16mhgp100-Aoah-1 B16mhgp100-Aoah
- GSM8838092 B16mhgp100-Aoah-2 B16mhgp100-Aoah
- GSM8838093 B16mhgp100-Aoah-3 B16mhgp100-Aoah
- GSM8838094 B16mhgp100-Aoah-4 B16mhgp100-Aoah
- GSM8838095 B16F10-Aoah-1 B16F10-Aoah
- GSM8838096 B16F10-Aoah-2 B16F10-Aoah
- GSM8838097 B16mhgp100-Vector-1 B16mhgp100-Vecto
- GSM8838098 B16mhgp100-Vector-2 B16mhgp100-Vecto
- GSM8838099 B16mhgp100-Vector-3 B16mhgp100-Vecto
- GSM8838100 B16mhgp100-Vector-4 B16mhgp100-Vecto
- GSM8838101 B16F10-Vector-1 B16F10-Vecto
- GSM8838102 B16F10-Vector-2 B16F10-Vecto
- GSE291582 Bulk RNA-seq analysis of molecular characteristics induced by Colq over-expression in B16mhgp100 subcutaneous implanted tumors 8 samples shares b16, characteristics, over-expression, subcutaneous, implanted, rna-seq, induced, bulk
- GSE291584 Bulk RNA-seq analysis of molecular characteristics induced by Cr1l over-expression in B16mhgp100 subcutaneous implanted tumors 7 samples shares b16, characteristics, over-expression, subcutaneous, implanted, rna-seq, induced, bulk
- GSE291354 Bulk RNA-seq analysis of gene expression characteristics induced by Adamts7 over-expression in B2905-M4 subcutaneous implanted tumors 10 samples shares characteristics, over-expression, subcutaneous, implanted, rna-seq, induced, bulk
- GSE291586 Bulk RNA-seq analysis of molecular characteristics induced by Aoah over-expression in MYC-Luc spontaneous hepatocellular carcinoma tumors 14 samples shares characteristics, over-expression, rna-seq, induced, bulk
- GSE219143 RNA-seq of B16F10 cancer cells treated with different conditioned media from cancer cell-induced TAM 12 samples shares b16, rna-seq, induced
- GSE272235 Gene expression profile at single cell level of all CD45+ cells infiltrating B16-SIY-dsRed syngeneic tumors implanted subcutaneously after 26 days of tumor growth in Wildtype and PRKCD KO bone marrow engrafted animals 8 samples shares b16, subcutaneous, implanted
- GSE318327 Determine the transcriptional changes induced by Ce6@D4-EV–mediated targeted photodynamic therapy in subcutaneous KPC tumors via RNA-seq 8 samples shares subcutaneous, rna-seq, induced
- GSE291594 Single-cell analysis of immune cell characteristics induced by Aoah over-expression in MYC-Luc spontaneous hepatocellular carcinoma tumors 24 samples shares characteristics, over-expression, induced
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.