mesendoderm differentiation with Hif-1a knockdown
RNA-seq (gene expression) · mouse · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE200739_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA826451 and SRA study SRP370054. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 12 more — browse all 12 samples with per-sample file links →
- GSE268827 scramble control and Hif-1a knockdown mESCs cultured under normoxia and two-day hypoxia 12 samples shares hif-1a, knockdown
- GSE228365 Effect of depletion of HIF-1a on gene expression during B cell IgA class switching [RNA-seq] 6 samples shares hif-1a
- GSE217364 Foxp1 suppresses cortical angiogenesis and attenuates HIF-1alpha signaling to promote neural progenitor cell maintenance. 6 samples shares hif-1a
- GSE307480 Effect of HIF-1alpha knockout in gene expression profile of osteosarcoma cells in vivo. 4 samples shares hif-1a
- GSE253544 Effect of knockdown of Zbtb9 on gene expression during adipogenic differentiation of 3T3-L1 preadipocytes 32 samples shares knockdown
- GSE261608 Effect of Adgrd1 or Gpr39 knockdown during differentiation of adipose progenitor cell 15 samples shares knockdown
- GSE286132 IFIT1 Knockdown Mitigates Translational Suppression, Enhancing Myogenic Differentiation and Revitalizing Mesenchymal Stem Cell Therapy for Myocardial Infarction [II] 6 samples shares knockdown
- GSE284366 IFIT1 Knockdown Mitigates Translational Suppression, Enhancing Myogenic Differentiation and Revitalizing Mesenchymal Stem Cell Therapy for Myocardial Infarction 6 samples shares knockdown
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.