Effect of Adgrd1 or Gpr39 knockdown during differentiation of adipose progenitor cell
RNA-seq (gene expression) · mouse · 15 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 15 samples: 15 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE261608_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1088108 and SRA study SRP495281. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 15 sample titles: 15 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8147345 RNAseq_si-Scramble_1 [Con1]
- GSM8147346 RNAseq_si-Scramble_2 [Con2]
- GSM8147347 RNAseq_si-Scramble_3 [Con3]
- GSM8147348 RNAseq_si-Scramble_4 [Con4]
- GSM8147349 RNAseq_si-Scramble_5 [Con5]
- GSM8147350 RNAseq_si-Adgrd1_1 [siA1]
- GSM8147351 RNAseq_si-Adgrd1_2 [siA2]
- GSM8147352 RNAseq_si-Adgrd1_3 [siA3]
- GSM8147353 RNAseq_si-Adgrd1_4 [siA4]
- GSM8147354 RNAseq_si-Adgrd1_5 [siA5]
- GSM8147355 RNAseq_si-Gpr39_1 [siG1]
- GSM8147356 RNAseq_si-Gpr39_2 [siG2]
- GSM8147357 RNAseq_si-Gpr39_3 [siG3]
- GSM8147358 RNAseq_si-Gpr39_4 [siG4]
- GSM8147359 RNAseq_si-Gpr39_5 [siG5]
- GSE267192 PPARγ-dependent Remodeling of Translational Machinery in Adipose Progenitors is Impaired in Obesity [scRNA-seq] 12 samples shares progenitor, adipose
- GSE268058 PPARγ-dependent Remodeling of Translational Machinery in Adipose Progenitors is Impaired in Obesity 24 samples shares progenitor, adipose
- GSE312829 GPR39 activation inhibits AQP2 trafficking and alters cytoskeletal organization 24 samples shares gpr39
- GSE326003 The differentiation of myeloid progenitors is effected by cascading waves of coordinated gene expression that remodel cellular physiology in a characteristic sequence [RNA-seq] 165 samples shares progenitor
- GSE264171 Effects at the transcriptomic level after knockout of Eed, Ezh2, Brd8 or Nr6a1 in spinal cord neural progenitor differentiation [bulkRNAseq] 41 samples shares progenitor
- GSE273079 Castration Increases Aggressiveness of Prostatic Luminal Progenitor Cells in Prostate Cancer Through FosL1/AP-1-Mediated Transcriptional Reprogramming 384 samples shares progenitor
- GSE224275 Effects on the transcriptome of mouse embryonic fibroblasts after both Son overexpression and knockdown and treatment with 3μM nintedanib, 1μM ponatinib, 3μM proflavine hemisulfate, and 1μM pyrvinium pamoate 43 samples shares knockdown
- GSE327470 Temporal Uncoupling of Radial Glial Progenitor Cell Lineage Progression in Self-organizing Organoid System 292 samples shares progenitor
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.