Transcription factor EHF interacting with transcription coactivator AJUBA (JUB) aggravates malignancy of gastroesophageal adenocarcinoma [RNA-seq]
RNA-seq (gene expression) · human · 27 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 27 samples: 27 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Transcription factor EHF interacting with coactivator AJUBA aggravates malignancy and acts as a therapeutic target for gastroesophageal adenocarcinomaActa pharmaceutica Sinica. B · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE207553_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA856169 and SRA study SRP385080. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 27 sample titles: 27 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM6294411 AGS_siEHF#1_rep1 [RNA-seq]
- GSM6294412 AGS_siEHF#1_rep2 [RNA-seq]
- GSM6294413 AGS_siEHF#1_rep3 [RNA-seq]
- GSM6294414 AGS_siEHF#3_rep1 [RNA-seq]
- GSM6294415 AGS_siEHF#3_rep2 [RNA-seq]
- GSM6294416 AGS_siEHF#3_rep3 [RNA-seq]
- GSM6294417 AGS_siNC(EHF)_rep1 [RNA-seq]
- GSM6294418 AGS_siNC(EHF)_rep2 [RNA-seq]
- GSM6294419 AGS_siNC(EHF)_rep3 [RNA-seq]
- GSM6294420 OE33_siEHF#1_rep1 [RNA-seq]
- GSM6294421 OE33_siEHF#1_rep2 [RNA-seq]
- GSM6294422 OE33_siEHF#3_rep1 [RNA-seq]
- GSM6294423 OE33_siEHF#3_rep2 [RNA-seq]
- GSM6294424 OE33_siNC(EHF)_rep1 [RNA-seq]
- GSM6294425 OE33_siNC(EHF)_rep2 [RNA-seq]
- GSM6294426 AGS_siJUB#1_rep1 [RNA-seq]
- GSM6294427 AGS_siJUB#1_rep2 [RNA-seq]
- GSM6294428 AGS_siJUB#5_rep1 [RNA-seq]
- GSM6294429 AGS_siJUB#5_rep2 [RNA-seq]
- GSM6294430 AGS_siNC(JUB)_rep1 [RNA-seq]
- GSM6294431 AGS_siNC(JUB)_rep2 [RNA-seq]
- GSM6294432 OE33_siJUB#1_rep1 [RNA-seq]
- GSM6294433 OE33_siJUB#1_rep2 [RNA-seq]
- GSM6294434 OE33_siJUB#5_rep1 [RNA-seq]
- GSM6294435 OE33_siJUB#5_rep2 [RNA-seq]
- GSM6294436 OE33_siNC(JUB)_rep1 [RNA-seq]
- GSM6294437 OE33_siNC(JUB)_rep2 [RNA-seq]
- GSE207556 Transcription factor EHF interacting with transcription coactivator AJUBA (JUB) aggravates malignancy of gastroesophageal adenocarcinoma. 38 samples shares ajuba, ehf, jub, gastroesophageal, adenocarcinoma, transcription, interacting, coactivator
- GSE207554 Transcription factor EHF interacting with transcription coactivator AJUBA (JUB) aggravates malignancy of gastroesophageal adenocarcinoma [ChIP-seq] 8 samples shares ajuba, ehf, jub, gastroesophageal, adenocarcinoma, transcription, interacting, coactivator
- GSE207555 Transcription factor EHF interacting with transcription coactivator AJUBA (JUB) aggravates malignancy of gastroesophageal adenocarcinoma [ATAC-seq] 3 samples shares ajuba, ehf, jub, gastroesophageal, adenocarcinoma, transcription, interacting, coactivator
- GSE256301 Mutational signature-based identification of DNA repair deficient gastroesophageal adenocarcinomas for therapeutic targeting 2 samples shares gastroesophageal, adenocarcinoma
- GSE173882 ELF5 regulates epithelial integrity independently of EHF [RNA-seq] 6 samples shares ehf
- GSE220784 Gene expression profile at single cell level of hiPSC-derived lung airways epithelial cells upon knock-out of EHF in normoxia and in hypoxia 4 samples shares ehf
- GSE173883 ELF5 regulates epithelial integrity independently of EHF 10 samples shares ehf
- GSE173880 ELF5 regulates epithelial integrity independently of EHF [ChIP-seq] 4 samples shares ehf
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.