Transcription factor EHF interacting with transcription coactivator AJUBA (JUB) aggravates malignancy of gastroesophageal adenocarcinoma.
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 38 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 38 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Transcription factor EHF interacting with coactivator AJUBA aggravates malignancy and acts as a therapeutic target for gastroesophageal adenocarcinomaActa pharmaceutica Sinica. B · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE207556_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA856162 and SRA study SRP385079. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 38 more — browse all 38 samples with per-sample file links →
- GSE207553 Transcription factor EHF interacting with transcription coactivator AJUBA (JUB) aggravates malignancy of gastroesophageal adenocarcinoma [RNA-seq] 27 samples shares ajuba, ehf, jub, gastroesophageal, adenocarcinoma, transcription, interacting, coactivator
- GSE207554 Transcription factor EHF interacting with transcription coactivator AJUBA (JUB) aggravates malignancy of gastroesophageal adenocarcinoma [ChIP-seq] 8 samples shares ajuba, ehf, jub, gastroesophageal, adenocarcinoma, transcription, interacting, coactivator
- GSE207555 Transcription factor EHF interacting with transcription coactivator AJUBA (JUB) aggravates malignancy of gastroesophageal adenocarcinoma [ATAC-seq] 3 samples shares ajuba, ehf, jub, gastroesophageal, adenocarcinoma, transcription, interacting, coactivator
- GSE256301 Mutational signature-based identification of DNA repair deficient gastroesophageal adenocarcinomas for therapeutic targeting 2 samples shares gastroesophageal, adenocarcinoma
- GSE173883 ELF5 regulates epithelial integrity independently of EHF 10 samples shares ehf
- GSE173882 ELF5 regulates epithelial integrity independently of EHF [RNA-seq] 6 samples shares ehf
- GSE173880 ELF5 regulates epithelial integrity independently of EHF [ChIP-seq] 4 samples shares ehf
- GSE220784 Gene expression profile at single cell level of hiPSC-derived lung airways epithelial cells upon knock-out of EHF in normoxia and in hypoxia 4 samples shares ehf
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.