OCT4, NANOG and CTCF in human embryonic stem cells
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 17 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 17 samples
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE21200_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA126283 and SRA study SRP002053. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 17 more — browse all 17 samples with per-sample file links →
- GSE264191 Secreted factors from M1 macrophages drive prostate cancer stem cell plasticity by upregulating NANOG, SOX2 and CD44 through NFκB signaling 30 samples shares nanog, stem
- GSE286923 Modularity of OCT4 underlies its functional diversity in reprogramming and embryonic development. 19 samples shares oct4, embryonic
- GSE251851 Secreted factors from M1 macrophages drive prostate cancer stem cell plasticity by upregulating NANOG, SOX2 and CD44 through NFκB signaling [LNCaP] 18 samples shares nanog, stem
- GSE201709 Multiomic profiling of vascular endothelial cell differentiation from human embryonic stem cells 130 samples shares embryonic, stem
- GSE242906 Transcription factor ZNF263 primes human embryonic stem cells for pluripotency dissolution and early differentiation 81 samples shares embryonic, stem
- GSE328191 Multiomic profiling of vascular endothelial cell differentiation from human embryonic stem cells [ChIP-seq] 80 samples shares embryonic, stem
- GSE249035 Sex-biased Gene Expression During Neural Differentiation of Human Embryonic Stem Cells 72 samples shares embryonic, stem
- GSE328189 Multiomic profiling of vascular endothelial cell differentiation from human embryonic stem cells [EC diff RNA-Seq] 36 samples shares embryonic, stem
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.