GEO series
Chromatin accessibility in B16 and 4T1 cell lines with decitabine treatment [ATAC-seq]
GSE212026
Mus musculus
Genome binding/occupancy profiling by high throughput sequencing
12 samples
2024/06/30
GPL21103GPL24247
Summary
The goal of ATAC-seq is to identify the open chromatin regions in the B16 and 4T1 cells after Decitabine treatment. Three biological replicates were assigned for each group and in total 12 groups were prepared for ATAC-seq libraries. We mapped about 30-100 million reads per sample to M.musculus (mm10) with bowtie2 workflow. Open chromatin regions were deducted by ChIPseeker with corrected p < 0.05. Our results showed M.Musculus have dispartate chromatin accessibility after Decitabine treatment
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Paper (PMID 39169233) ↗
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