Glucocorticoid receptor action in mouse granulosa cells in response to LH surge
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 9 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 9 samples: 7 distinct titles, 2 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE249985_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1051552 and SRA study SRP477558. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 9 sample titles: 7 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7968462 PMSG, GR, rep1
- GSM7968463 PMSG, GR, rep2
- GSM7968464 hCG, GR, rep1
- GSM7968465 hCG, GR, rep2
- GSM7968466 PMSG, H3K27ac
- GSM7968467 pooled input
- GSM9019558 PRWT, GR
- GSM9019559 PRKO, GR
- GSM9019560 PRWT, PRKO, pooled input
- GSE249984 Androgen receptor action in mouse granulosa cells in response to LH surge 14 samples shares granulosa, receptor, action, surge
- GSE306261 Astrocyte glucocorticoid receptor signaling restricts neuronal plasticity [CUT&RUN] 50 samples shares glucocorticoid, receptor
- GSE255212 Transcriptomic Signatures of WNT-Driven Pathways and Granulosa Cell-Oocyte Interaction during Primordial Follicle Activation 762 samples shares granulosa, action
- GSE306265 Astrocyte glucocorticoid receptor signaling restricts neuronal plasticity 106 samples shares glucocorticoid, receptor
- GSE337903 Retina-specific glucocorticoid receptor deletion disrupts rhythmic gene expression in the mouse retina under light-dark conditions 8 samples shares glucocorticoid, receptor
- GSE306262 Astrocyte glucocorticoid receptor signaling restricts neuronal plasticity [RNA-seq] 40 samples shares glucocorticoid, receptor
- GSE316048 A Receptor-Clamped IL-2 Uncouples Treg Expansion from Injection Site Reactions 24 samples shares receptor, action
- GSE316171 Fibroblast Growth Factor Receptor Signaling in Maturing Osteoblasts Controls Cell-Matrix Interactions Critical for Osteocyte Survival 8 samples shares receptor, action
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.