RNA sequencing data of normal glucose tolerant (NGT) and gestational diabetes (GDM) pregnant women
Non-coding RNA profiling · human · 12 samples
- What it is
- Non-coding RNA profilingLevels of RNAs that do not code for proteins, such as miRNA or lncRNA.
- Organism
- Homo sapiens (human)
- Samples
- 12 samples: 12 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE218697_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
Also filed as BioProject PRJNA904816 and SRA study SRP409550. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 12 sample titles: 12 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM6755160 con1_combinedRNA
- GSM6755161 con2_combinedRNA
- GSM6755162 con4_combinedRNA
- GSM6755163 con5_combinedRNA
- GSM6755164 con6_combinedRNA
- GSM6755165 con7_combinedRNA
- GSM6755166 exp1_combinedRNA
- GSM6755167 exp3_combinedRNA
- GSM6755168 exp4_combinedRNA
- GSM6755169 exp7_combinedRNA
- GSM6755170 exp8_combinedRNA
- GSM6755171 exp9_combinedRNA
- GSE297755 RNA-seq data from gingival crevicular fluid of pregnant women for gestational diabetes mellitus (GDM) prediction 10 samples shares gdm, gestational, diabetes, pregnant
- GSE280975 Single-cell transcriptomics reveals markers of regulatory T cell dysfunction in Gestational Diabetes Mellitus 33 samples shares gestational, diabetes
- GSE237061 Transcriptomic profiling of human placenta in gestational diabetes mellitus 22 samples shares gestational, diabetes
- GSE284329 Multi-Omics Profiling Reveals Distinct Lipidomic and Transcriptomic Alterations in Gestational Diabetes Mellitus, Preeclampsia, and Coexistence of Both: Implications for Maternal and Neonatal Outcomes 17 samples shares gestational, diabetes
- GSE263483 Effects of intrauterine hyperglycemia on offspring development in gestational diabetes mellitus based on placental transcriptomics 16 samples shares gestational, diabetes
- GSE270928 Single-cell sequencing of full-length transcripts and T-cell receptors with automated high-throughput Smart-seq3 [HT SS3] 6415 samples shares ngt
- GSE242198 Multi-OMIC analysis of Huntington disease reveals a neuroprotective astrocyte state 156 samples shares ngt
- GSE188558 Shared patterns of glial transcriptional dysregulation link Huntington's disease and schizophrenia 137 samples shares ngt
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.