ZBTB24 is a conserved multifaceted transcription factor at genes and centromeres that governs the DNA methylation state and expression of satellite repeats [ChIP-Seq]
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 20 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 20 samples: 20 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- ZBTB24 is a conserved multifaceted transcription factor at genes and centromeres that governs the DNA methylation state and expression of satellite repeatsHuman molecular genetics · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE218862_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA906043 and SRA study SRP410201. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 20 sample titles: 20 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM6757932 mES cells, WT1, 2i, input
- GSM6757933 mES cells, WT2, 2i, input
- GSM6757934 mES cells, WT1, d3, input
- GSM6757935 mES cells, WT2, d3, input
- GSM6757936 mES cells, WT1, 2i, ZBTB24
- GSM6757937 mES cells, WT2, 2i, ZBTB24
- GSM6757938 mES cells, WT1, d3, ZBTB24
- GSM6757939 mES cells, WT2, d3, ZBTB24
- GSM6757940 LCLs, WT_2591, input_ZBTB24
- GSM6757941 LCLs, WT_2592, input_ZBTB24
- GSM6757942 LCLs, WT_ESGO, input_ZBTB24
- GSM6757943 LCLs, WT_2591, input_IgG
- GSM6757944 LCLs, WT_2592, input_IgG
- GSM6757945 LCLs, WT_ESGO, input_IgG
- GSM6757946 LCLs, WT_2591, IgG
- GSM6757947 LCLs, WT_2592, IgG
- GSM6757948 LCLs, WT_ESGO, IgG
- GSM6757949 LCLs, WT_2591, ZBTB24
- GSM6757950 LCLs, WT_2592, ZBTB24
- GSM6757951 LCLs, WT_ESGO, ZBTB24
- GSE260742 DOT1L provides transcriptional memory through PRC1.1 antagonism [ChIP-Seq] 158 samples shares transcription, chip-seq
- GSE292300 A core transcriptional regulatory circuitry controls super-enhancer-driven activation of LGR5 in colorectal cancer: ChIP-seq 76 samples shares transcription, chip-seq
- GSE218716 EZH2 gain-of-function mutations distort H3K27me3 landscapes and transform transcriptional responses to PRC2 inhibition [ChIP-Seq/Cut&Run-Seq] 156 samples shares transcription, chip-seq
- GSE287347 MafB is a conserved transcriptional regulator of macrophage development and identity across tissues and species 57 samples shares transcription, conserved
- GSE261351 Direct measurement of RNA Polymerase II hypertranscription in cancer FFPE samples 278 samples shares transcription
- GSE286875 Improved spike-in normalization clarifies the relationship between active histone modifications and transcription 244 samples shares transcription
- GSE240599 An eRNA Transcription Checkpoint For Diverse Signal-dependent Enhancer Activation Programs 130 samples shares transcription
- GSE188412 The PAF1 Complex Regulates Transcriptional Termination and Reinitiation [CUT&Tag] 71 samples shares transcription
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.