Capturing totipotency in human cells through spliceosomal repression [ATAC-seq]
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 2 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 2 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Capturing totipotency in human cells through spliceosomal repressionCell · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE226229_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA939206 and SRA study SRP424790. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 2 more — browse all 2 samples with per-sample file links →
- GSE226231 Capturing totipotency in human cells through spliceosomal repression 112 samples shares spliceosomal, totipotency, repression, capturing
- GSE224794 Capturing totipotency in human cells through spliceosomal repression [RNA-Seq] 92 samples shares spliceosomal, totipotency, repression, capturing
- GSE226228 Capturing totipotency in human cells through spliceosomal repression [scRNA-seq] 14 samples shares spliceosomal, totipotency, repression, capturing
- GSE306350 GSX2 Regulates Progenitor Maturation and Regional Identity Through Transcriptional Repression in the Developing Basal Ganglia [ATAC-seq] 36 samples shares repression, atac-seq
- GSE284553 CEBPA repression by MECOM blocks differentiation to drive aggressive leukemias [ATAC-Seq] 22 samples shares repression, atac-seq
- GSE327360 Motif-directed chromatin repression by BCL11B shapes ectopic targeting and lineage commitment [ATAC-seq] 20 samples shares repression, atac-seq
- GSE271752 Macromolecular interactions dictate Polycomb-mediated epigenetic repression [ChIP-seq] 194 samples shares repression
- GSE275238 LINE1 and PRC2 control nucleolar organization and repression of the 8C-state in human ESCs [ChIP-seq_primed,RSeT,RSeT+DT_hESCs] 18 samples shares repression
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.