Transcriptome data of monocytes from adolescents with obesity and age / sex matched controls
RNA-seq (gene expression) · human · 22 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 22 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Increased innate immune responses in adolescents with obesity and its relation to subclinical cardiovascular measures: An exploratory studyiScience · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE226280_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA939519 and SRA study SRP424925. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 22 more — browse all 22 samples with per-sample file links →
- GSE270484 Patchseq Data of T1D Donor Islets vs ND Matched Controls 958 samples shares controls, matched
- GSE261559 Neutrophil transcriptome in community acquired pneumonia and age matched controls 14 samples shares controls, matched
- GSE309422 RNAseq analysis of human neutrophil mRNA from adults with SLE and age-matched healthy controls 21 samples shares controls, matched
- GSE205672 Transcriptomes of human PBMCs and monocytes in sepsis patients 460 samples shares monocytes
- GSE252020 Decoding CD4+ T cell transcriptome in giant cell arteritis: novel pathways and altered cross-talk with monocytes [RNA-seq] 98 samples shares monocytes
- GSE324210 Exercise Training Attenuates the Monocyte Transcriptome Response to Acute Exercise in Adolescents: Evidence for Sex-Specific Molecular Adaptations 83 samples shares adolescents
- GSE255685 Age-related transcriptomic differences in peripheral blood of adolescents with major depressive disorder 279 samples shares adolescents
- GSE336982 Obesity Promotes Lung Carcinogenesis Through Airway Immune Dysfunction 183 samples shares obesity
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.